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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2357Putative kinase; Similar to Brucella suis shikimate kinase Arok or br2029 SWALL:Q8FY59 (EMBL:AE014491) (200 aa) fasta scores: E(): 2.3, 20.78% id in 178 aa, and to the C-terminal region of Rhizobium loti glucokinase mlr3412 SWALL:Q98GB0 (EMBL:AP003001) (482 aa) fasta scores: E(): 1.5e-27, 45.71% id in 175 aa. (177 aa)    
Predicted Functional Partners:
ECA2358
Putative aldolase; Similar to Rhizobium loti tagatose-1,6-bisphosphate aldolase mlr3411 SWALL:Q98GB1 (EMBL:AP003001) (302 aa) fasta scores: E(): 2.3e-75, 62.75% id in 298 aa, and to Streptococcus mutans tagatose 1,6-diphosphate aldolase LacD or smu.1493 SWALL:LACD_STRMU (SWALL:P26425) (325 aa) fasta scores: E(): 4.2e-06, 23.19% id in 319 aa.
 
     0.870
ECA2355
Hypothetical protein; No significant database matches.
       0.801
ECA2356
Putative sugar phosphotransferase enzyme IIa component; Similar to Escherichia coli, and Escherichia coli O157:H7 unknown pentitol phosphotransferase enzyme ii, a component sgaa or b4195 or z5804 or ecs5171 SWALL:PTXA_ECOLI (SWALL:P39303) (154 aa) fasta scores: E(): 2.3e-15, 34.01% id in 147 aa, and to Salmonella typhimurium putative PTS enzyme iisga subunit ptxa or stm4385 SWALL:Q8ZK88 (EMBL:AE008905) (154 aa) fasta scores: E(): 9e-16, 34.69% id in 147 aa.
       0.801
traF
Putative plasmid transfer protein; Similar to Shigella sonnei TraF protein SWALL:Q9Z4A1 (EMBL:AB021078) (400 aa) fasta scores: E(): 2.9e-81, 55% id in 400 aa, and to Salmonella typhimurium TraF protein SWALL:Q9R2H5 (EMBL:AB027308) (400 aa) fasta scores: E(): 3.4e-81, 54.75% id in 400 aa, and to Escherichia fergusonii TraF SWALL:Q8KR61 (EMBL:AY046057) (401 aa) fasta scores: E(): 1e-61, 44.52% id in 402 aa.
  
     0.662
ECA2353
Putative exported protein; Similar to Listeria monocytogenes hypothetical protein Lmo2650 SWALL:Q8Y425 (EMBL:AL591984) (90 aa) fasta scores: E(): 5e-08, 35.1% id in 94 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein stm2343 or sty2573 SWALL:Q8XG32 (EMBL:AE008805) (90 aa) fasta scores: E(): 7.8e-08, 42.85% id in 91 aa.
 
     0.635
ECA2354
Putative membrane protein; Similar to Salmonella typhimurium putative inner membrane protein stm2342 SWALL:Q8ZND3 (EMBL:AE008805) (463 aa) fasta scores: E(): 2.2e-69, 44.27% id in 445 aa, and to Staphylococcus aureus Mw0306 protein mw0306 SWALL:Q8NYB3 (EMBL:AP004823) (448 aa) fasta scores: E(): 1.1e-68, 45.57% id in 441 aa.
       0.603
ECA1947
Putative sugar-binding periplasmic protein (pseudogene); 1 probable transmembrane helix predicted for ECA1945 by TMHMM2.0 at aa 34-56.
  
     0.588
virB10
Putative conjugal transfer protein; Similar to Escherichia coli Virb10 protein VirB10 SWALL:Q91UW7 (EMBL:AJ297913) (383 aa) fasta scores: E(): 1.2e-23, 32.41% id in 401 aa.
  
     0.567
ECA2352
Putative 6-phosphofructokinase isozyme II; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family.
       0.562
ECA4198
Putative exported phosphatase; Similar to Pseudomonas syringae phytase PhyM SWALL:AAN77879 (EMBL:AY156083) (428 aa) fasta scores: E(): 3.4e-77, 48.73% id in 433 aa, and to Escherichia coli glucose-1-phosphatase precursor Agp or b1002 SWALL:AGP_ECOLI (SWALL:P19926) (413 aa) fasta scores: E(): 1.5e-31, 31.08% id in 415 aa.
  
     0.548
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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