STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2359Conserved hypothetical protein; Similar to Salmonella typhimurium putative cytoplasmic protein ycgb or stm1804 SWALL:Q8ZP16 (EMBL:AE008780) (510 aa) fasta scores: E(): 1.3e-185, 85.6% id in 507 aa, and to Escherichia coli hypothetical protein ycgb or b1188 SWALL:YCGB_ECOLI (SWALL:P29013) (510 aa) fasta scores: E(): 4.9e-185, 84.98% id in 506 aa. (513 aa)    
Predicted Functional Partners:
ECA2348
Conserved hypothetical protein; Similar to Salmonella typhimurium putative ser protein kinase yeag or stm1285 SWALL:Q8ZPW2 (EMBL:AE008755) (644 aa) fasta scores: E(): 0, 94.09% id in 644 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yeag or b1783 or c2188 or z2823 or ecs2492 SWALL:YEAG_ECOLI (SWALL:P77391) (644 aa) fasta scores: E(): 0, 94.09% id in 644 aa.
 
  
 0.990
ECA2349
Conserved hypothetical protein; Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein t1163 SWALL:AAO68822 (EMBL:AE016838) (428 aa) fasta scores: E(): 2.7e-140, 86.85% id in 426 aa, and to Escherichia coli hypothetical protein yeah or b1784 SWALL:YEAH_ECOLI (SWALL:P76235) (427 aa) fasta scores: E(): 3.6e-139, 87.41% id in 421 aa; Belongs to the UPF0229 family.
 
  
 0.990
uspB
Similar to Yersinia pestis universal stress protein B UspB SWALL:Q8ZA50 (EMBL:AJ414160) (111 aa) fasta scores: E(): 3.4e-43, 84.68% id in 111 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 universal stress protein b UspB SWALL:USPB_ECOLI (SWALL:P37632) (111 aa) fasta scores: E(): 4.2e-40, 81.08% id in 111 aa.
   
  
 0.573
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
   
  
 0.573
blc
Outer membrane lipoprotein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
   
    0.552
phoH
Phosphate starvation-inducible protein; Similar to Escherichia coli, and Escherichia coli O157:H7 phoh protein PhoH or PsiH or b1020 or z1522 or ecs1266 SWALL:PHOH_ECOLI (SWALL:P31544) (354 aa) fasta scores: E(): 1.1e-85, 86.97% id in 261 aa.
   
    0.519
ECA0251
endonuclease/Exonuclease/phosphatase family protein; No significant database matches.
   
    0.506
napD
NapAB assembly protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
   
    0.499
ECA2248
Conserved hypothetical protein; Similar to Escherichia coli O157:H7 putative mannosyl-3-phosphoglycerate phosphatase yedp or z3045 or ecs2693 SWALL:Q8XB99 (EMBL:AE005417) (271 aa) fasta scores: E(): 1e-36, 43.07% id in 260 aa, and to Salmonella typhimurium, and Salmonella typhi putative mannosyl-3-phosphoglycerate phosphatase yedp or stm1986 or sty2193 SWALL:Q8XGE1 (EMBL:AE008788) (271 aa) fasta scores: E(): 1.1e-35, 40.44% id in 267 aa.
   
    0.432
ECA2358
Putative aldolase; Similar to Rhizobium loti tagatose-1,6-bisphosphate aldolase mlr3411 SWALL:Q98GB1 (EMBL:AP003001) (302 aa) fasta scores: E(): 2.3e-75, 62.75% id in 298 aa, and to Streptococcus mutans tagatose 1,6-diphosphate aldolase LacD or smu.1493 SWALL:LACD_STRMU (SWALL:P26425) (325 aa) fasta scores: E(): 4.2e-06, 23.19% id in 319 aa.
       0.426
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.