STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2382Similar to Ralstonia solanacearum putative transmemembrane reductase oxidoreductase protein rsp1147 or rs05455 SWALL:Q8XQS2 (EMBL:AL646083) (208 aa) fasta scores: E(): 4.5e-24, 43.81% id in 210 aa, and to Streptomyces coelicolor putative reductase sco0967 or scm11.22C SWALL:Q9RIU0 (EMBL:AL939107) (207 aa) fasta scores: E(): 5.2e-16, 39.89% id in 188 aa. (210 aa)    
Predicted Functional Partners:
ECA4220
Similar to Streptomyces coelicolor hypothetical protein sco0965 or scm11.20C SWALL:Q9RIU2 (EMBL:AL939107) (219 aa) fasta scores: E(): 1.8e-24, 45.21% id in 188 aa, and to Rhizobium loti hypothetical protein Mll0243 SWALL:Q98N90 (EMBL:AP002994) (231 aa) fasta scores: E(): 4.1e-19, 40% id in 195 aa.
  
     0.762
ECA0923
Similar to Synechocystis sp. hypothetical protein slr0317 SWALL:Q55924 (EMBL:D64005) (287 aa) fasta scores: E(): 3.1e-18, 31.95% id in 291 aa, and to Rhizobium loti hypothetical protein mll1871 SWALL:Q98JM9 (EMBL:AP002998) (293 aa) fasta scores: E(): 2.1e-17, 29.49% id in 295 aa, and to Escherichia coli hypothetical protein YtfG SWALL:YTFG_ECOLI (SWALL:P39315) (286 aa) fasta scores: E(): 1.9e-12, 29.23% id in 236 aa.
  
    0.540
ECA2381
Similar to Vibrio vulnificus transcriptional regulator vv21654 SWALL:AAO08512 (EMBL:AE016813) (307 aa) fasta scores: E(): 3.6e-40, 39.79% id in 299 aa, and to Xanthomonas campestris transcriptional regulator xcc3667 SWALL:Q8P4P0 (EMBL:AE012487) (311 aa) fasta scores: E(): 7.8e-40, 41.27% id in 298 aa; Belongs to the LysR transcriptional regulatory family.
       0.540
ECA2383
Putative isochorismatase; Similar to Pseudomonas aeruginosa probable hydrolase pa1202 SWALL:Q9I4D6 (EMBL:AE004550) (205 aa) fasta scores: E(): 3.9e-25, 41.17% id in 204 aa, and to Pseudomonas syringae isochorismatase family protein pspto1009 SWALL:AAO54542 (EMBL:AE016859) (208 aa) fasta scores: E(): 5.3e-24, 38.91% id in 203 aa.
       0.477
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.