STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2383Putative isochorismatase; Similar to Pseudomonas aeruginosa probable hydrolase pa1202 SWALL:Q9I4D6 (EMBL:AE004550) (205 aa) fasta scores: E(): 3.9e-25, 41.17% id in 204 aa, and to Pseudomonas syringae isochorismatase family protein pspto1009 SWALL:AAO54542 (EMBL:AE016859) (208 aa) fasta scores: E(): 5.3e-24, 38.91% id in 203 aa. (237 aa)    
Predicted Functional Partners:
ECA3015
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein ElaB or stm2311 or sty2542 SWALL:Q8XF60 (EMBL:AE008803) (103 aa) fasta scores: E(): 1e-19, 68.42% id in 95 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ElaB protein ElaB or b2266 or c2810 or z3526 or ecs3154 SWALL:ELAB_ECOLI (SWALL:P52084) (101 aa) fasta scores: E(): 3.3e-19, 65.26% id in 95 aa.
   
    0.566
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 
 
 0.541
entA
Enterobactin synthetase component A (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase); Similar to Escherichia coli 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase EntA or b0596 SWALL:ENTA_ECOLI (SWALL:P15047) (248 aa) fasta scores: E(): 6.7e-54, 59.92% id in 252 aa.
  
 0.535
entC
Enterobactin synthetase component C (isochorismate synthase); Similar to Escherichia coli, and Escherichia coli O157:H7 isochorismate synthase EntC or b0593 or z0735 or ecs0632 SWALL:ENTC_ECOLI (SWALL:P10377) (391 aa) fasta scores: E(): 6.1e-66, 46.31% id in 393 aa, and to Pseudomonas fluorescens isochorismate synthase PmsC SWALL:P95475 (EMBL:Y09356) (391 aa) fasta scores: E(): 8.2e-75, 51.2% id in 373 aa.
     
 0.515
menF
Menaquinone-specific isochorismate synthase; Catalyzes the conversion of chorismate to isochorismate.
     
 0.515
nnrE
Putative carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of [...]
  
    0.504
ECA3563
Conserved hypothetical protein; Similar to Xanthomonas axonopodis nonf-related protein NonF or xac3491 SWALL:Q8PGX1 (EMBL:AE011997) (226 aa) fasta scores: E(): 1.8e-58, 68.77% id in 221 aa, and to Rhizobium meliloti hypothetical protein rb0205 or smb20212 SWALL:Q92WX2 (EMBL:AL603642) (226 aa) fasta scores: E(): 3.3e-57, 66.96% id in 224 aa.
 
   0.497
osmC
Similar to Escherichia coli, and Shigella flexneri osmotically inducible protein C OsmC or b1482 or sf1743 SWALL:OSMC_ECOLI (SWALL:P23929) (142 aa) fasta scores: E(): 4.2e-45, 87.14% id in 140 aa.
   
    0.491
ECA3603
Putative flavodoxin; Similar to Agrobacterium tumefaciens flavodoxin WrbA or atu4201 or agr_l_1309 SWALL:Q8U897 (EMBL:AE009349) (193 aa) fasta scores: E(): 1.2e-43, 65.73% id in 178 aa, and to Escherichia coli hypothetical 19.6 kDa protein SWALL:Q9F7X7 (EMBL:AF270497) (183 aa) fasta scores: E(): 3.8e-49, 69.78% id in 182 aa.
  
    0.489
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.480
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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