STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
manYPTS system, mannose-specific IIc component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, mannose-specific IIc component ManY or PtsP or Pel or b1818 or c2224 or z2861 or ecs2528 or sf1410 SWALL:PTNC_ECOLI (SWALL:P08187) (266 aa) fasta scores: E(): 1e-78, 87.21% id in 266 aa. (265 aa)    
Predicted Functional Partners:
manX
PTS system, mannose-specific IIab component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, mannose-specific iiab component ManX or PtsL or GptB or b1817 or c2223 or z2860 or ecs2527 or sf1411 SWALL:PTNA_ECOLI (SWALL:P08186) (322 aa) fasta scores: E(): 5.5e-80, 74.84% id in 322 aa.
 
 0.999
manZ
PTS system, mannose-specific iid component; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 PTS system, mannose-specific IId component ManZ or PtsM or GptB or b1819 or c2226 or z2862 or ecs2529 SWALL:PTND_ECOLI (SWALL:P08188) (286 aa) fasta scores: E(): 4.9e-91, 83.45% id in 278 aa.
 0.999
ptsH
PTS system phosphocarrier protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri phosphocarrier protein Hpr or b2415 or c2950 or z3681 or ecs3287 or stm2431 or sty2667 or t0426 or sf2470 SWALL:PTHP_ECOLI (SWALL:P07006) (85 aa) fasta scores: E(): 1e-27, 97.64% id in 85 aa.
  
 
 0.917
manA
Similar to Escherichia coli mannose-6-phosphate isomerase ManA or Pmi or b1613 SWALL:MANA_ECOLI (SWALL:P00946) (391 aa) fasta scores: E(): 1e-110, 71.28% id in 390 aa.
    
  0.912
rfbK
Phosphomannomutase; Similar to Escherichia coli phosphomannomutase ManB or RfbK or RfbK2 SWALL:RFK9_ECOLI (SWALL:P37755) (456 aa) fasta scores: E(): 8.5e-137, 74.34% id in 456 aa.
     
  0.900
scrK
Fructokinase; Similar to Escherichia coli fructokinase CscK SWALL:SCRK_ECOLI (SWALL:P40713) (307 aa) fasta scores: E(): 4.5e-67, 60.39% id in 303 aa, and to Erwinia amylovora fructokinase ScrK SWALL:Q9F4A1 (EMBL:AJ250722) (308 aa) fasta scores: E(): 1.6e-65, 60.06% id in 303 aa; Belongs to the carbohydrate kinase PfkB family.
    
  0.808
ECA1107
Similar to Escherichia coli hypothetical protein YajF or b0394 SWALL:YAJF_ECOLI (SWALL:P23917) (302 aa) fasta scores: E(): 5e-91, 75.74% id in 301 aa, and to Salmonella typhimurium putative sugar kinase/putative transcriptional regulator YajF or stm0393 SWALL:Q8ZRE5 (EMBL:AE008713) (302 aa) fasta scores: E(): 6.6e-91, 75.66% id in 300 aa.
    
 0.801
ECA2388
Similar to Yersinia pestis putative membrane protein ypo1755 or y2554 SWALL:AAM86109 (EMBL:AJ414150) (153 aa) fasta scores: E(): 3e-41, 73.02% id in 152 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein yobd or b1820 or c2227 SWALL:YOBD_ECOLI (SWALL:P76263) (152 aa) fasta scores: E(): 8.8e-33, 57.89% id in 152 aa.
 
     0.770
fruA
Similar to Escherichia coli pts system, fructose-specific IIbc component FruA or PtsF or b2167 SWALL:PTFB_ECOLI (SWALL:P20966) (563 aa) fasta scores: E(): 1.4e-146, 75.13% id in 567 aa.
   
  
 0.704
ECA0661
Similar to Erwinia chrysanthemi PTS system, beta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 2.4e-60, 42.76% id in 622 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 6.6e-60, 42.09% id in 639 aa.
  
  
 0.482
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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