STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2388Similar to Yersinia pestis putative membrane protein ypo1755 or y2554 SWALL:AAM86109 (EMBL:AJ414150) (153 aa) fasta scores: E(): 3e-41, 73.02% id in 152 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein yobd or b1820 or c2227 SWALL:YOBD_ECOLI (SWALL:P76263) (152 aa) fasta scores: E(): 8.8e-33, 57.89% id in 152 aa. (152 aa)    
Predicted Functional Partners:
manZ
PTS system, mannose-specific iid component; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 PTS system, mannose-specific IId component ManZ or PtsM or GptB or b1819 or c2226 or z2862 or ecs2529 SWALL:PTND_ECOLI (SWALL:P08188) (286 aa) fasta scores: E(): 4.9e-91, 83.45% id in 278 aa.
 
    0.793
manY
PTS system, mannose-specific IIc component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, mannose-specific IIc component ManY or PtsP or Pel or b1818 or c2224 or z2861 or ecs2528 or sf1410 SWALL:PTNC_ECOLI (SWALL:P08187) (266 aa) fasta scores: E(): 1e-78, 87.21% id in 266 aa.
 
    0.788
ECA2552
Similar to Yersinia pestis hypothetical protein Ypo1401 SWALL:Q8ZGA3 (EMBL:AJ414148) (297 aa) fasta scores: E(): 4.9e-98, 73.4% id in 297 aa, and to Salmonella typhimurium mukf protein stm0989 SWALL:Q8ZQB9 (EMBL:AE008742) (297 aa) fasta scores: E(): 2e-77, 58.78% id in 296 aa.
  
     0.768
ECA4366
Similar to Salmonella typhi hypothetical protein Sty4178 SWALL:Q8Z293 (EMBL:AL627281) (523 aa) fasta scores: E(): 3.7e-67, 44.09% id in 381 aa, and to Escherichia coli hypothetical protein yhjs or b3536 SWALL:YHJS_ECOLI (SWALL:P37657) (523 aa) fasta scores: E(): 1.6e-66, 44.97% id in 378 aa.
  
     0.767
wecH
Putative membrane protein; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
  
     0.760
flgM
Similar to Escherichia coli, and Shigella flexneri negative regulator of flagellin synthesis FlgM or b1071 or sf1077 SWALL:FLGM_ECOLI (SWALL:P43532) (97 aa) fasta scores: E(): 4.5e-14, 59.18% id in 98 aa.
  
     0.759
ECA1166
Similar to Yersinia pestis hypothetical protein ypo3137 or y1047 SWALL:Q8ZC84 (EMBL:AJ414155) (122 aa) fasta scores: E(): 8.8e-36, 74.59% id in 122 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ybaj or b0461 or c0579 or z0574 or ecs0514 SWALL:YBAJ_ECOLI (SWALL:P37611) (124 aa) fasta scores: E(): 1.4e-26, 60.83% id in 120 aa.
  
     0.748
manX
PTS system, mannose-specific IIab component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, mannose-specific iiab component ManX or PtsL or GptB or b1817 or c2223 or z2860 or ecs2527 or sf1411 SWALL:PTNA_ECOLI (SWALL:P08186) (322 aa) fasta scores: E(): 5.5e-80, 74.84% id in 322 aa.
 
    0.748
ECA3261
Similar to Yersinia pestis putative membrane protein ypo2924 SWALL:Q8ZCP9 (EMBL:AJ414154) (215 aa) fasta scores: E(): 1.7e-62, 74.27% id in 206 aa, and to Salmonella typhimurium putatative phosphoserine phosphatase yfhb or stm2569 SWALL:Q8ZN27 (EMBL:AE008817) (211 aa) fasta scores: E(): 3e-62, 71.01% id in 207 aa.
  
     0.743
mzrA
Putative exported protein; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.
  
     0.742
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.