Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfeASimilar to Yersinia pestis periplasmic chelated iron-binding protein YfeA precursor yfea or ypo2439 or y1897 SWALL:YFEA_YERPE (SWALL:Q56952) (311 aa) fasta scores: E(): 1.6e-89, 78.85% id in 298 aa; Belongs to the bacterial solute-binding protein 9 family. (304 aa)    
Predicted Functional Partners:
yfeC
Similar to Yersinia pestis chelated iron transport system membrane protein YfeC or ypo2441 or y1895 SWALL:YFEC_YERPE (SWALL:Q56954) (294 aa) fasta scores: E(): 2.1e-93, 90.03% id in 281 aa.
 
 0.999
yfeB
Similar to Yersinia pestis chelated iron transport system membrane protein YfeB or ypo2440 or y1896 SWALL:YFEB_YERPE (SWALL:Q56953) (296 aa) fasta scores: E(): 1.6e-83, 80.14% id in 277 aa.
 
 
 0.998
yfeD
Similar to Yersinia pestis chelated iron transport system membrane protein YfeD or ypo2442 or y1894 SWALL:YFED_YERPE (SWALL:Q56955) (297 aa) fasta scores: E(): 3.6e-84, 76.67% id in 283 aa.
 
 0.998
ECA3756
Similar to Escherichia coli putative ABC transporter ATP-binding protein SWALL:CAD33755 (EMBL:AJ488511) (244 aa) fasta scores: E(): 1.5e-51, 65.65% id in 230 aa, and to Rhizobium loti ABC transporter, ATP-binding protein mll8315 SWALL:Q983I5 (EMBL:AP003013) (272 aa) fasta scores: E(): 8.5e-29, 45.87% id in 218 aa.
 
 
 0.937
ECA3757
Similar to Escherichia coli putative ABC transporter membrane protein SWALL:CAD33756 (EMBL:AJ488511) (284 aa) fasta scores: E(): 2e-79, 80.35% id in 280 aa, and to Neisseria meningitidis putative ABC-transporter membrane protein nma0790 SWALL:Q9JVL3 (EMBL:AL162754) (291 aa) fasta scores: E(): 2.8e-54, 57.14% id in 280 aa.
 
 0.937
znuB
Similar to Escherichia coli high-affinity zinc uptake system membrane protein ZnuB or b1859 SWALL:ZNUB_ECOLI (SWALL:P39832) (261 aa) fasta scores: E(): 5.3e-80, 83.01% id in 259 aa.
 
 0.857
znuC
High-affinity zinc uptake system ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
 
 0.742
rpsN
30S ribosomal subunit protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.581
ECA1189
Similar to Escherichia coli hypothetical protein yjia or b4352 SWALL:YJIA_ECOLI (SWALL:P24203) (318 aa) fasta scores: E(): 1e-81, 67.93% id in 315 aa, and to Salmonella typhimurium putative cobalamin synthesis protein yjia or stm4530 SWALL:Q8ZJY6 (EMBL:AE008913) (318 aa) fasta scores: E(): 3.6e-81, 68.88% id in 315 aa.
  
  
 0.573
ECA2733
Conserved hypothetical protein; Similar to Yersinia pestis putative cobalamin synthesis protein ypo1277 or y2906 SWALL:AAM86457 (EMBL:AJ414147) (327 aa) fasta scores: E(): 9.2e-90, 70.6% id in 330 aa, and to Salmonella typhimurium, and Salmonella typhi putative cobalamin synthesis protein yeir or stm2212 or sty2448 SWALL:Q8XFI7 (EMBL:AE008799) (328 aa) fasta scores: E(): 9.7e-83, 66.26% id in 329 aa.
  
  
 0.573
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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