STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
togMBinding-protein-dependent transport system, inner membrane component; Similar to Erwinia chrysanthemi inner membrane protein TogM SWALL:Q93KC0 (EMBL:AJ305144) (296 aa) fasta scores: E(): 1.2e-115, 97.63% id in 296 aa. (296 aa)    
Predicted Functional Partners:
togN
Binding-protein-dependent transport system, inner membrane component; Similar to Erwinia chrysanthemi inner membrane protein TogN SWALL:Q93KB9 (EMBL:AJ305144) (300 aa) fasta scores: E(): 1.7e-108, 90.03% id in 301 aa.
 
 0.998
togA
ABC transporter, ATP-binding component; Similar to Erwinia chrysanthemi ABC ATPase TogA SWALL:Q93KB8 (EMBL:AJ305144) (375 aa) fasta scores: E(): 8e-119, 85.6% id in 375 aa.
 
 0.996
togB
Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 3.3e-143, 84.84% id in 429 aa, and to Yersinia pestis putative sugar-binding protein ypo1719 or TogB or y1881 SWALL:Q8ZFI4 (EMBL:AJ414150) (430 aa) fasta scores: E(): 1.4e-137, 80.69% id in 430 aa. Also similar to ECA3551 (56.398% id) and to ECA2210 (50.117% id).
 
 0.996
ECA2210
Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 5.9e-79, 49.29% id in 428 aa, and to Yersinia pestis putative sugar-binding protein ypo1719 or TogB or y1881 SWALL:AAM85448 (EMBL:AJ414150) (430 aa) fasta scores: E(): 2.2e-79, 49.52% id in 422 aa. Also similar to ECA2406(TogB) (50.117% id) and to ECA3551 (47.442% id).
 
 0.988
malG
Similar to Yersinia pestis putative maltodextrin permease protein ypo0854 or MalG or y3239 SWALL:Q8ZHN6 (EMBL:AJ414145) (283 aa) fasta scores: E(): 9.1e-93, 83.98% id in 281 aa, and to Bacillus halodurans maltose/maltodextrin transport system bh2021 SWALL:Q9KBA7 (EMBL:AP001514) (283 aa) fasta scores: E(): 1.9e-77, 69.14% id in 282 aa.
 
 0.971
ECA3551
Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 8.1e-98, 56.7% id in 425 aa, and to Yersinia pestis putative sugar-binding protein ypo1719 or TogB or y1881 SWALL:Q8ZFI4 (EMBL:AJ414150) (430 aa) fasta scores: E(): 1.4e-93, 55.47% id in 411 aa. Also similar to ECA2406 (TogB) (56.398% id) and to ECA2210 (47.442% id).
 
 0.955
malE
Maltose-binding periplasmic protein; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Binds maltose and higher maltodextrins. Belongs to the bacterial solute-binding protein 1 family.
 0.950
ECA0850
Putative sugar ABC transporter, permease protein; Similar to Agrobacterium radiobacter lactose transport system permease protein LacG SWALL:LACG_AGRRD (SWALL:P29824) (273 aa) fasta scores: E(): 6.5e-66, 57.46% id in 268 aa, and to Bacillus subtilis L-arabinose transport system permease protein AraQ SWALL:ARAQ_BACSU (SWALL:P94530) (281 aa) fasta scores: E(): 1e-30, 33.94% id in 271 aa.
 
 0.938
ECA3746
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4557 or agr_l_624 SWALL:Q8U797 (EMBL:AE009383) (349 aa) fasta scores: E(): 2.9e-96, 69.42% id in 350 aa, and to Thermoanaerobacter tengcongensis sugar permeases malg4 or tte1936 SWALL:Q8R8Q9 (EMBL:AE013144) (275 aa) fasta scores: E(): 1.5e-45, 39.93% id in 328 aa.
 
 0.915
ECA0851
Putative sugar ABC transporter ATP-binding protein; Similar to Agrobacterium radiobacter lactose transport ATP-binding protein LacK SWALL:LACK_AGRRD (SWALL:Q01937) (363 aa) fasta scores: E(): 5.5e-66, 56.16% id in 365 aa, and to Yersinia pestis putative transport ATP-binding protein y3242 SWALL:AAM86792 (EMBL:AE013925) (368 aa) fasta scores: E(): 1.1e-77, 60.94% id in 361 aa; Belongs to the ABC transporter superfamily.
 
 0.912
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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