STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
togNBinding-protein-dependent transport system, inner membrane component; Similar to Erwinia chrysanthemi inner membrane protein TogN SWALL:Q93KB9 (EMBL:AJ305144) (300 aa) fasta scores: E(): 1.7e-108, 90.03% id in 301 aa. (301 aa)    
Predicted Functional Partners:
togB
Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 3.3e-143, 84.84% id in 429 aa, and to Yersinia pestis putative sugar-binding protein ypo1719 or TogB or y1881 SWALL:Q8ZFI4 (EMBL:AJ414150) (430 aa) fasta scores: E(): 1.4e-137, 80.69% id in 430 aa. Also similar to ECA3551 (56.398% id) and to ECA2210 (50.117% id).
 
 0.999
togM
Binding-protein-dependent transport system, inner membrane component; Similar to Erwinia chrysanthemi inner membrane protein TogM SWALL:Q93KC0 (EMBL:AJ305144) (296 aa) fasta scores: E(): 1.2e-115, 97.63% id in 296 aa.
 
 0.998
togA
ABC transporter, ATP-binding component; Similar to Erwinia chrysanthemi ABC ATPase TogA SWALL:Q93KB8 (EMBL:AJ305144) (375 aa) fasta scores: E(): 8e-119, 85.6% id in 375 aa.
 
 0.998
ECA3551
Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 8.1e-98, 56.7% id in 425 aa, and to Yersinia pestis putative sugar-binding protein ypo1719 or TogB or y1881 SWALL:Q8ZFI4 (EMBL:AJ414150) (430 aa) fasta scores: E(): 1.4e-93, 55.47% id in 411 aa. Also similar to ECA2406 (TogB) (56.398% id) and to ECA2210 (47.442% id).
 
 0.993
ECA2210
Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 5.9e-79, 49.29% id in 428 aa, and to Yersinia pestis putative sugar-binding protein ypo1719 or TogB or y1881 SWALL:AAM85448 (EMBL:AJ414150) (430 aa) fasta scores: E(): 2.2e-79, 49.52% id in 422 aa. Also similar to ECA2406(TogB) (50.117% id) and to ECA3551 (47.442% id).
 
 0.989
ECA0849
Putative sugar ABC transporter, permease protein; Similar to Agrobacterium radiobacter lactose transport system permease protein LacF SWALL:LACF_AGRRD (SWALL:P29823) (298 aa) fasta scores: E(): 1.2e-73, 62.54% id in 291 aa, and to Rhizobium meliloti probable lactose uptake ABC transporter permease protein LacF or rb0002 or smb21653 SWALL:Q92XF9 (EMBL:AL603642) (298 aa) fasta scores: E(): 2.1e-74, 65.27% id in 288 aa.
 
 0.963
ECA0748
Putative binding-protein-dependent transport system protein; Similar to Bradyrhizobium japonicum protein bll4140 SWALL:BAC49405 (EMBL:AP005950) (325 aa) fasta scores: E(): 4.8e-47, 48.18% id in 276 aa, and to Bifidobacterium longum sugar permease of ABC transporter system bl0189 SWALL:AAN24043 (EMBL:AE014636) (317 aa) fasta scores: E(): 7.2e-31, 34.73% id in 285 aa. Note that there are no significant database matches to enterobacterial species.
 
 0.939
ECA3747
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4558 or agr_l_623 SWALL:Q8U796 (EMBL:AE009384) (352 aa) fasta scores: E(): 6.2e-82, 63.09% id in 317 aa, and to Thermoanaerobacter tengcongensis ABC-type sugar transport systems, permease components malf4 or tte1937 SWALL:Q8R8Q8 (EMBL:AE013144) (294 aa) fasta scores: E(): 5e-30, 37.62% id in 295 aa.
 
 0.939
malF
Similar to Escherichia coli maltose transport system permease protein MalF or b4033 SWALL:MALF_ECOLI (SWALL:P02916) (514 aa) fasta scores: E(): 5.9e-36, 39.71% id in 277 aa, and to Yersinia pestis putative maltodextrin transport permease ypo0855 or MalF or y3240 SWALL:Q8ZHN5 (EMBL:AJ414145) (435 aa) fasta scores: E(): 6.8e-138, 81.86% id in 419 aa.
 
 0.933
ugpA
Sn-glycerol-3-phosphate transport system permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.927
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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