STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgMSimilar to Erwinia chrysanthemi oligogalacturonate-specific porin KdgM precursor kdgM SWALL:KDGM_ERWCH (SWALL:Q934G3) (236 aa) fasta scores: E(): 7.1e-64, 67.22% id in 238 aa. Also similar to ECA2302 (59.259% id). (238 aa)    
Predicted Functional Partners:
rlpB
Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
   
 
 0.609
kdgF
Similar to Erwinia chrysanthemi pectin degradation protein KdgF SWALL:KDGF_ERWCH (SWALL:Q05527) (110 aa) fasta scores: E(): 3.3e-38, 89.09% id in 110 aa, and to Yersinia pestis putative pectin degradation protein KdgF or y1888 SWALL:AAM85455 (EMBL:AE013792) (116 aa) fasta scores: E(): 2.9e-33, 77.98% id in 109 aa.
     
 0.531
ogl
Oligogalacturonate lyase; Involved in degradation of pectin, which causes soft-rod disease in plants.
  
  
 0.504
togT
Similar to Erwinia chrysanthemi oligogalacturonide transporter TogT SWALL:Q93KC2 (EMBL:AJ305143) (508 aa) fasta scores: E(): 5.8e-176, 84.81% id in 507 aa. Also similar to ECA3560 (40.426% id. in 517 aa overlap).
      
 0.478
exuT
Galacturonate transporter; Similar to Erwinia chrysanthemi ExuT SWALL:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 6.4e-122, 88.78% id in 330 aa, and to Ralstonia solanacearum ExuT SWALL:Q93AS8 (EMBL:AF417111) (439 aa) fasta scores: E(): 2.8e-99, 56.39% id in 422 aa.
      
 0.459
RhiT
Similar to Erwinia chrysanthemi oligogalacturonide transporter TogT SWALL:Q93KC2 (EMBL:AJ305143) (508 aa) fasta scores: E(): 1.2e-83, 42% id in 519 aa. Also similar to ECA0817 (TogT) (40.426% id. in 517 aa overlap).
      
 0.459
kdgK
2-dehydro-3-deoxygluconokinase; Similar to Erwinia chrysanthemi 2-dehydro-3-deoxygluconokinase KdgK SWALL:KDGK_ERWCH (SWALL:P45416) (310 aa) fasta scores: E(): 1.4e-100, 82.25% id in 310 aa.
      
 0.459
lptA
Putative exported protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
  
 
 0.442
ompA
Outer-membrane protein A; Similar to Erwinia carotovora putative outer-membrane protein a precursor OmpA SWALL:Q9RM69 (EMBL:AJ249340) (367 aa) fasta scores: E(): 2.6e-120, 90.32% id in 372 aa, and to Serratia marcescens outer membrane protein a precursor OmpA SWALL:OMPA_SERMA (SWALL:P04845) (359 aa) fasta scores: E(): 4.8e-71, 75.61% id in 369 aa; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
      
 0.441
togB
Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 3.3e-143, 84.84% id in 429 aa, and to Yersinia pestis putative sugar-binding protein ypo1719 or TogB or y1881 SWALL:Q8ZFI4 (EMBL:AJ414150) (430 aa) fasta scores: E(): 1.4e-137, 80.69% id in 430 aa. Also similar to ECA3551 (56.398% id) and to ECA2210 (50.117% id).
       0.419
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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