STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2413Putative membrane protein; Similar to Escherichia coli O6 hypothetical protein yddg or c1902 SWALL:Q8FHH9 (EMBL:AE016760) (293 aa) fasta scores: E(): 3.5e-58, 49.14% id in 291 aa, and to Salmonella typhimurium putative permease yddg or stm1571 SWALL:Q8ZPE4 (EMBL:AE008768) (274 aa) fasta scores: E(): 3.1e-53, 48.7% id in 271 aa. (295 aa)    
Predicted Functional Partners:
nadE
NH3-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.
       0.547
ECA2414
Similar to Yersinia pestis putative ABC transporter ATP-binding protein ypo1735 or y2573 SWALL:Q8ZFH4 (EMBL:AJ414150) (572 aa) fasta scores: E(): 3.6e-167, 79.37% id in 572 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu1738 or agr_c_3190 SWALL:Q8UEL9 (EMBL:AE009130) (598 aa) fasta scores: E(): 1.2e-148, 69.59% id in 569 aa.
   
   0.530
frdC
Fumarate reductase 15 kDa hydrophobic protein; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.
  
     0.430
ECA2415
Similar to Salmonella typhi hypothetical protein Sty2982 SWALL:Q8Z4B1 (EMBL:AL627276) (114 aa) fasta scores: E(): 6.2e-26, 58.92% id in 112 aa, and to Escherichia coli O6 hypothetical protein ygba or c3293 SWALL:AAN81742 (EMBL:AE016765) (114 aa) fasta scores: E(): 2.5e-25, 58.03% id in 112 aa.
 
     0.425
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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