STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2415Similar to Salmonella typhi hypothetical protein Sty2982 SWALL:Q8Z4B1 (EMBL:AL627276) (114 aa) fasta scores: E(): 6.2e-26, 58.92% id in 112 aa, and to Escherichia coli O6 hypothetical protein ygba or c3293 SWALL:AAN81742 (EMBL:AE016765) (114 aa) fasta scores: E(): 2.5e-25, 58.03% id in 112 aa. (147 aa)    
Predicted Functional Partners:
ECA1474
Conserved hypothetical protein; Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein year or b1797 or z2839 or ecs2506 SWALL:YEAR_ECOLI (SWALL:P76248) (119 aa) fasta scores: E(): 3.1e-30, 66.66% id in 105 aa, and to Salmonella typhi hypothetical protein Sty1850 SWALL:Q8Z6D6 (EMBL:AL627271) (120 aa) fasta scores: E(): 5.8e-30, 65.71% id in 105 aa.
  
   
 0.561
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
    0.527
ECA2414
Similar to Yersinia pestis putative ABC transporter ATP-binding protein ypo1735 or y2573 SWALL:Q8ZFH4 (EMBL:AJ414150) (572 aa) fasta scores: E(): 3.6e-167, 79.37% id in 572 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu1738 or agr_c_3190 SWALL:Q8UEL9 (EMBL:AE009130) (598 aa) fasta scores: E(): 1.2e-148, 69.59% id in 569 aa.
       0.518
ECA2743
Similar to Escherichia coli hypothetical protein yech or b1906 SWALL:YECH_ECOLI (SWALL:P46887) (79 aa) fasta scores: E(): 5.8e-18, 62.02% id in 79 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yech or stm1936 or sty2144 SWALL:Q8XGI3 (EMBL:AE008786) (79 aa) fasta scores: E(): 1.1e-16, 59.49% id in 79 aa.
  
     0.430
ECA2413
Putative membrane protein; Similar to Escherichia coli O6 hypothetical protein yddg or c1902 SWALL:Q8FHH9 (EMBL:AE016760) (293 aa) fasta scores: E(): 3.5e-58, 49.14% id in 291 aa, and to Salmonella typhimurium putative permease yddg or stm1571 SWALL:Q8ZPE4 (EMBL:AE008768) (274 aa) fasta scores: E(): 3.1e-53, 48.7% id in 271 aa.
 
     0.425
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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