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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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co-expression
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gene co-occurrence
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[Homology]
Score
oglOligogalacturonate lyase; Involved in degradation of pectin, which causes soft-rod disease in plants. (388 aa)    
Predicted Functional Partners:
pelX
Similar to Erwinia chrysanthemi exopolygalacturonate lyase PelX SWALL:Q9Z5P8 (EMBL:Y16797) (734 aa) fasta scores: E(): 1.9e-206, 73.8% id in 733 aa, and to Erwinia chrysanthemi pectate disaccharide-lyase precursor PelX SWALL:PELX_ERWCH (SWALL:P22751) (749 aa) fasta scores: E(): 2.8e-195, 74.16% id in 689 aa.
 
  
 0.983
pelW
Similar to Erwinia chrysanthemi pectate disaccharide-lyase PelW or KdgC SWALL:PELW_ERWCH (SWALL:Q05526) (553 aa) fasta scores: E(): 1.8e-175, 73.97% id in 538 aa. Also similar to ECA2135 (PelB) (37.782% id 532 aa overlap).
     
 0.972
pehN
Similar to Erwinia chrysanthemi putative polygalacturonase precursor PehN SWALL:Q8KKH7 (EMBL:AJ292044) (457 aa) fasta scores: E(): 9.4e-151, 80.13% id in 458 aa; Belongs to the glycosyl hydrolase 28 family.
     
 0.970
kduI2
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
     
 0.969
kdgF
Similar to Erwinia chrysanthemi pectin degradation protein KdgF SWALL:KDGF_ERWCH (SWALL:Q05527) (110 aa) fasta scores: E(): 3.3e-38, 89.09% id in 110 aa, and to Yersinia pestis putative pectin degradation protein KdgF or y1888 SWALL:AAM85455 (EMBL:AE013792) (116 aa) fasta scores: E(): 2.9e-33, 77.98% id in 109 aa.
 
  
 0.968
ECA2135
Similar to Erwinia carotovora periplasmic pectate lyase precursor PelB SWALL:PELP_ERWCA (SWALL:P14005) (568 aa) fasta scores: E(): 0, 97% id in 568 aa, and to Erwinia carotovora pectatelyase SWALL:Q47466 (EMBL:J03673) (568 aa) fasta scores: E(): 0, 96.3% id in 568 aa. Also similar to ECA2402 (PelB) (37.782% id 532 aa overlap).
     
 0.951
ECA3112
Pectate lyase; Similar to Bacillus sp pectate lyase PelK SWALL:BAA05383 (EMBL:D26349) (420 aa) fasta scores: E(): 2.7e-35, 35.16% id in 472 aa, and to Erwinia chrysanthemi pectate lyase a precursor PelA SWALL:PELA_ERWCH (SWALL:P29155) (393 aa) fasta scores: E(): 1.1e-27, 31.9% id in 442 aa.
     
  0.944
kduI1
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
     
 0.934
pehA
Endo-polygalacturonase; Similar to Erwinia carotovora endo-polygalacturonase precursor PehA SWALL:PGL2_ERWCA (SWALL:P26509) (402 aa) fasta scores: E(): 1.4e-143, 97.76% id in 402 aa, and to Erwinia carotovora Peh precursor SWALL:Q9S5V7 (EMBL:AB022681) (402 aa) fasta scores: E(): 1.3e-140, 95.77% id in 402 aa; Belongs to the glycosyl hydrolase 28 family.
     
 0.933
rhiE
Rhamnogalacturonate lyase; Similar to Erwinia chrysanthemi rhamnogalacturonase precursor RhiE SWALL:Q8RJP2 (EMBL:AJ438339) (578 aa) fasta scores: E(): 1.3e-133, 60.1% id in 554 aa. The only other significant database matches are of eukaryotic origin.
      
 0.774
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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