STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2428Similar to Xanthomonas axonopodis glycerophosphodiester phosphodiesterase GlpQ or xac1147 SWALL:Q8PNC6 (EMBL:AE011744) (273 aa) fasta scores: E(): 1.4e-20, 32.25% id in 279 aa, and to Agrobacterium tumefaciens hypothetical protein atu4572 atu4572 or agr_l_598 SWALL:Q8U782 (EMBL:AE009385) (306 aa) fasta scores: E(): 1.1e-38, 39.31% id in 262 aa. (282 aa)    
Predicted Functional Partners:
ugpQ
Similar to Escherichia coli glycerophosphoryl diester phosphodiesterase UgpQ or b3449 SWALL:UGPQ_ECOLI (SWALL:P10908) (247 aa) fasta scores: E(): 1.3e-71, 73.55% id in 242 aa.
  
  
 
0.928
pldB
Lysophospholipase L2; Similar to Escherichia coli lysophospholipase L2 PldB or b3825 SWALL:PLDB_ECOLI (SWALL:P07000) (340 aa) fasta scores: E(): 3e-78, 59.56% id in 324 aa.
    
 0.914
glpQ
Similar to Escherichia coli glycerophosphoryl diester phosphodiesterase, periplasmic precursor GlpQ or b2239 SWALL:GLPQ_ECOLI (SWALL:P09394) (358 aa) fasta scores: E(): 4e-103, 72.7% id in 359 aa.
     
0.911
ECA2429
Similar to Escherichia coli, and Escherichia coli O157:H7 glycerol-3-phosphate-binding periplasmic protein precursor UgpB or b3453 or z4822 or ecs4299 SWALL:UGPB_ECOLI (SWALL:P10904) (438 aa) fasta scores: E(): 2.4e-110, 62.67% id in 426 aa.
 
  
 0.752
glpA
Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri anaerobic glycerol-3-phosphate dehydrogenase subunit A GlpA or b2241 or z3499 or ecs3126 or sf2323 SWALL:GLPA_ECOLI (SWALL:P13032) (542 aa) fasta scores: E(): 1.1e-153, 72.34% id in 546 aa; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
 0.721
glpD
Similar to Escherichia coli aerobic glycerol-3-phosphate dehydrogenase GlpD or GlyD or b3426 SWALL:GLPD_ECOLI (SWALL:P13035) (501 aa) fasta scores: E(): 9e-157, 76.59% id in 500 aa; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
 0.703
glpB
Anaerobic glycerol-3-phosphate dehydrogenase subunit B; Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor.
  
 
  0.627
aplK
Glycerol kinase; Involved in catabolism of D-apiose. Catalyzes phosphorylation of apulose to form apulose 4-phosphate.
 
  
 0.594
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
 
  
 0.591
glpC
Similar to Escherichia coli, and Escherichia coli O157:H7 anaerobic glycerol-3-phosphate dehydrogenase subunit C GlpC or b2243 or z3501 or ecs3128 SWALL:GLPC_ECOLI (SWALL:P13034) (396 aa) fasta scores: E(): 2.2e-126, 76.82% id in 397 aa.
  
 
  0.524
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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