STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2433Putative signaling protein; Similar to Caulobacter crescentus sensory box/ggdef family protein cc3094 SWALL:Q9A3V7 (EMBL:AE005972) (748 aa) fasta scores: E(): 3.4e-74, 34.06% id in 731 aa, and to Rhizobium loti hypothetical protein Mll7787 SWALL:Q984Y8 (EMBL:AP003012) (724 aa) fasta scores: E(): 1.7e-66, 37.17% id in 581 aa. (722 aa)    
Predicted Functional Partners:
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
 0.998
rpfA
Two-component sensor kinase and response regulator; Similar to Pectobacterium carotovorum subsp. carotovorum sensor/regulator protein RpfA SWALL:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0, 92.88% id in 928 aa, and to Pectobacterium carotovorum subsp. carotovorum sensory kinase ExpS SWALL:O32556 (EMBL:Y13670) (928 aa) fasta scores: E(): 0, 95.36% id in 928 aa.
 0.997
ECA3886
Putative membrane protein; Similar to the C-terminal region of many including Pseudomonas aeruginosa hypothetical protein Pa2870 SWALL:Q9HZX6 (EMBL:AE004713) (525 aa) fasta scores: E(): 1.9e-17, 39.39% id in 165 aa, and to Shewanella oneidensis ggdef domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2.1e-17, 39.03% id in 187 aa.
 
0.997
ECA0266
Similar to Yersinia pestis putative exported protein ypo3664 SWALL:Q8ZAW7 (EMBL:AJ414158) (638 aa) fasta scores: E(): 3.6e-144, 55.91% id in 642 aa, and to Escherichia coli O6 hypothetical protein YhdA SWALL:AAN82448 (EMBL:AE016767) (646 aa) fasta scores: E(): 1.8e-137, 52.85% id in 649 aa.
 
0.991
ECA2008
Putative signaling protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa2567 SWALL:Q9I0R8 (EMBL:AE004685) (587 aa) fasta scores: E(): 1.7e-61, 32.99% id in 582 aa, and to Xanthomonas campestris hypothetical protein Xcc1777 SWALL:Q8P9S1 (EMBL:AE012279) (618 aa) fasta scores: E(): 2e-57, 32.88% id in 590 aa.
 
0.991
ECA1568
Putative chemotaxis signal transduction protein; Similar to Vibrio fischeri CheV SWALL:AAL86625 (EMBL:AY079167) (306 aa) fasta scores: E(): 1.6e-26, 34.36% id in 323 aa, and to Salmonella typhimurium putative chemotaxis signal transduction protein stm2314 SWALL:Q8ZNE6 (EMBL:AE008803) (333 aa) fasta scores: E(): 8.2e-81, 70.44% id in 318 aa.
  
 0.989
ECA3549
Putative signaling protein; Similar to Vibrio vulnificus response regulator VieA vv21511 SWALL:AAO08375 (EMBL:AE016813) (386 aa) fasta scores: E(): 5.5e-16, 30.04% id in 233 aa, and to Anabaena sp. two-component response regulator alr1230 SWALL:Q8YXI3 (EMBL:AP003585) (403 aa) fasta scores: E(): 7.6e-16, 30.35% id in 224 aa.
 
0.979
rcsC
Two-component system sensor protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
 0.974
rcsD
Putative two-component system sensor kinase; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
  
 0.965
ECA2530
Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 2.1e-53, 42.66% id in 525 aa, and to Ralstonia solanacearum probable methyl-accepting chemotaxis transducer transmembrane protein rsc1155 or rs04596 SWALL:Q8Y089 (EMBL:AL646063) (629 aa) fasta scores: E(): 5e-74, 47.39% id in 538 aa.
  
 0.960
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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