STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rdgBRegulator of pectin lyase production; Similar to Erwinia carotovora DNA-binding protein RdgB SWALL:RDGB_ERWCA (SWALL:Q47588) (117 aa) fasta scores: E(): 2.2e-41, 94.01% id in 117 aa, and to Bacteriophage Mu middle operon regulator Mor or 17 or e17 SWALL:VMOR_BPMU (SWALL:P23848) (129 aa) fasta scores: E(): 4.3e-06, 34.28% id in 105 aa. (116 aa)    
Predicted Functional Partners:
ECA3723
Conserved phage-related protein; Similar to Salmonella typhi hypothetical protein Sty1619 SWALL:Q8Z6U7 (EMBL:AL627270) (371 aa) fasta scores: E(): 9.8e-89, 64.67% id in 368 aa.
 
     0.789
ECA3718
Conserved hypothetical phage-related protein; Similar to Bacteriophage Mu protein gp27 SWALL:VG27_BPMU (SWALL:Q9T1W7) (191 aa) fasta scores: E(): 0.0026, 22.87% id in 188 aa. Also similar to Salmonella typhi prophage-related protein Sty1614 SWALL:Q8Z6V2 (EMBL:AL627270) (181 aa) fasta scores: E(): 5.4e-54, 91.16% id in 181 aa.
 
     0.787
ECA3720
Putative phage-related protein; Similar to Bacteriophage Mu protein gp29 29 SWALL:VG29_BPMU (SWALL:Q9T1W5) (512 aa) fasta scores: E(): 1.2e-15, 26.52% id in 524 aa and to Salmonella typhi prophage related-protein Sty1616 SWALL:Q8Z6V0 (EMBL:AL627270) (498 aa) fasta scores: E(): 9.4e-146, 72.9% id in 502 aa.
 
     0.787
ECA3703
Conserved hypothetical phage-related protein; Similar to Salmonella typhi Eha SWALL:O87649 (EMBL:AF091717) (322 aa) fasta scores: E(): 1.5e-63, 86.9% id in 229 aa, and to Vibrio cholerae Eha protein vc1798 SWALL:Q9KR48 (EMBL:AE004256) (383 aa) fasta scores: E(): 6.4e-25, 40.15% id in 386 aa.
 
     0.786
ECA3704
Similar to Salmonella typhi hypothetical protein Sty1604 SWALL:Q8Z6W2 (EMBL:AL627270) (589 aa) fasta scores: E(): 4.3e-189, 82% id in 589 aa, and to Vibrio cholerae hypothetical protein Vc1799 SWALL:Q9KR47 (EMBL:AE004256) (585 aa) fasta scores: E(): 1.4e-49, 33.63% id in 559 aa.
 
     0.786
ECA3696
Similar to Bacteriophage Mu protein gemA SWALL:VG16_BPMU (SWALL:Q38494) (183 aa) fasta scores: E(): 1.3e-16, 43.66% id in 142 aa, and to Salmonella typhi hypothetical protein Sty1592 sty1592 SWALL:Q8Z6X2 (EMBL:AL627270) (150 aa) fasta scores: E(): 2.8e-32, 64.44% id in 135 aa.
 
     0.785
ECA3707
Putative phage-related DNA-binding protein; Similar to Neisseria meningitidis hypothetical protein Nmb1004 SWALL:Q9JZL2 (EMBL:AE002451) (81 aa) fasta scores: E(): 5.8e-07, 48.21% id in 56 aa, and to Xanthomonas campestris hypothetical protein Xcc2998 SWALL:Q8P6H1 (EMBL:AE012413) (84 aa) fasta scores: E(): 0.01, 36.06% id in 61 aa.
 
     0.785
ECA3726
Putative phage-related protein; Similar to Bacteriophage Mu protein Gp36 SWALL:VG36_BPMU (SWALL:Q9T1V9) (141 aa) fasta scores: E(): 0.0025, 26.02% id in 146 aa and to Salmonella typhi phage-related protein Sty1622 SWALL:Q8Z6U4 (EMBL:AL627270) (148 aa) fasta scores: E(): 4.4e-43, 75.67% id in 148 aa.
 
     0.785
ECA3721
Putative phage-related protein; Similar to Bacteriophage Mu F protein or Gp30 SWALL:VPF_BPMU (SWALL:Q01259) (439 aa) fasta scores: E(): 1e-43, 44.65% id in 262 aa and Salmonella typhi hypothetical protein Sty1617 SWALL:Q8Z6U9 (EMBL:AL627270) (273 aa) fasta scores: E(): 9.7e-98, 80.44% id in 271 aa.
 
     0.784
ECA3724
Conserved phage-related protein; Similar to Salmonella typhi hypothetical protein Sty1620 SWALL:Q8Z6U6 (EMBL:AL627270) (317 aa) fasta scores: E(): 1.3e-89, 75.07% id in 317 aa.
 
     0.783
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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