STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prcSimilar to Escherichia coli tail-specific protease precursor Prc or Tsp or b1830 SWALL:PRC_ECOLI (SWALL:P23865) (682 aa) fasta scores: E(): 1.6e-204, 80.47% id in 671 aa; Belongs to the peptidase S41A family. (671 aa)    
Predicted Functional Partners:
bcsC
Similar to Escherichia coli cellulose synthase operon protein C BcsC or b3530 SWALL:BCSC_ECOLI (SWALL:P37650) (1140 aa) fasta scores: E(): 9.5e-207, 50.65% id in 1145 aa.
  
 
 0.916
nlpI
Lipoprotein; May be involved in cell division.
  
 
 
 0.857
proQ
ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities. May regulate ProP activity through an RNA-based, post-transcriptional mechanism. Belongs to the ProQ family.
 
  
 0.857
spr
Lipoprotein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri lipoprotein Spr precursor Spr or b2175 or c2712 or z3434 or ecs3067 or sf2262 SWALL:SPR_ECOLI (SWALL:P77685) (188 aa) fasta scores: E(): 2.5e-50, 71.05% id in 190 aa.
    
 
 0.836
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
   
 
 0.820
ECA2461
Similar to Yersinia pestis hypothetical protein Ypo1703 SWALL:Q8ZFK0 (EMBL:AJ414150) (165 aa) fasta scores: E(): 6.2e-43, 66.25% id in 160 aa, and to Shigella flexneri orf, conserved hypothetical protein yebr or sf1393 SWALL:AAN42994 (EMBL:AE015164) (165 aa) fasta scores: E(): 1.6e-41, 63.8% id in 163 aa.
     
 0.692
ECA0170
Putative exported peptidase; Similar to Yersinia pestis putative membrane protein y0078 SWALL:AAM83673 (EMBL:AE013608) (456 aa) fasta scores: E(): 2.5e-78, 71.87% id in 416 aa, and to Salmonella typhi hypothetical protein Sty4090 SWALL:Q8Z2F1 (EMBL:AL627280) (427 aa) fasta scores: E(): 9.5e-72, 67.49% id in 403 aa, and to Escherichia coli hypothetical protein YibP SWALL:YIBP_ECOLI (SWALL:P37690) (419 aa) fasta scores: E(): 3.5e-71, 66.5% id in 403 aa.
  
  
 0.650
ECA0980
Autotransporter; Similar to Pseudomonas fluorescens serine protease homologue PspB SWALL:Q9ZNI5 (EMBL:AB015053) (1036 aa) fasta scores: E(): 1.6e-25, 28.66% id in 1106 aa, and to Serratia marcescens extracellular serine protease precursor SWALL:PRTT_SERMA (SWALL:P29805) (1045 aa) fasta scores: E(): 1.1e-16, 25.6% id in 1082 aa.
 
   
 0.649
clpX
ATP-dependent Clp protease ATP-binding subunit; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
 
 0.573
amiB
Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiB precursor AmiB or b4169 SWALL:AMIB_ECOLI (SWALL:P26365) (445 aa) fasta scores: E(): 5.9e-74, 65.34% id in 430 aa.
  
  
 0.557
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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