STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2469Putative exported protein; Similar to Bradyrhizobium japonicum Bll0285 protein Bll0285 SWALL:BAC45550 (EMBL:AP005935) (134 aa) fasta scores: E(): 1.4e-09, 40.19% id in 102 aa. (160 aa)    
Predicted Functional Partners:
ECA2468
Putative exported protein; Similar to Salmonella typhimurium putative outer membrane protein ycfr or stm1214 SWALL:Q8ZQ03 (EMBL:AE008753) (85 aa) fasta scores: E(): 2.6e-06, 48.23% id in 85 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein ybij precursor ybij or b0802 or c0886 or sf0752 SWALL:YBIJ_ECOLI (SWALL:P41038) (86 aa) fasta scores: E(): 1.3e-05, 52.32% id in 86 aa.
       0.420
mqo
Similar to Escherichia coli malate:quinone oxidoreductase Mqo or b2210 SWALL:MQO_ECOLI (SWALL:P33940) (548 aa) fasta scores: E(): 2.3e-143, 69.73% id in 522 aa, and to Pseudomonas aeruginosa probable malate:quinone oxidoreductase 1 Mqo1 or MqoA or pa3452 SWALL:MQO1_PSEAE (SWALL:Q9HYF4) (523 aa) fasta scores: E(): 5e-145, 69.06% id in 527 aa.
 
     0.410
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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