STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cspGCold shock protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri cold shock-like protein CspG or CspI or b0990 or c1123 or z1406 or ecs1145 or sf0991 SWALL:CSPG_ECOLI (SWALL:Q47130) (70 aa) fasta scores: E(): 8.2e-22, 80% id in 70 aa. (70 aa)    
Predicted Functional Partners:
rpmJ
50S ribosomal protein L36; Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L36 RpmJ or b3299 or z4669 or ecs4164 or stm3419 or sty4379 or t4086 or sf3331 SWALL:RL36_ECOLI (SWALL:P21194) (38 aa) fasta scores: E(): 1.1e-15, 94.73% id in 38 aa; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.500
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
   
 
 0.492
rpsL
30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.490
rplO
50S ribosomal subunit protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.473
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
 
 0.459
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 
 0.454
rpsE
30S ribosomal subunit protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.452
rpsU
30S ribosomal subunit protein S21; Identical to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, Shigella flexneri, and Yersinia pestis 30S ribosomal protein S21 RpsU or b3065 or c3816 or z4418 or ecs3948 or stm3209 or sty3388 or t3129 or sf3106 or ypo0645 or y3535 SWALL:RS21_ECOLI (SWALL:P02379) (70 aa) fasta scores: E(): 2.7e-24, 100% id in 70 aa; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.450
rpsS
30S ribosomal subunit protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
 
 0.449
rpsQ
30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 
 0.438
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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