STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znuCHigh-affinity zinc uptake system ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. (252 aa)    
Predicted Functional Partners:
znuB
Similar to Escherichia coli high-affinity zinc uptake system membrane protein ZnuB or b1859 SWALL:ZNUB_ECOLI (SWALL:P39832) (261 aa) fasta scores: E(): 5.3e-80, 83.01% id in 259 aa.
 
 0.997
znuA
Similar to Escherichia coli high-affinity zinc uptake system protein ZnuA precursor ZnuA or b1857 SWALL:ZNUA_ECOLI (SWALL:P39172) (310 aa) fasta scores: E(): 4.6e-47, 61.05% id in 321 aa.
 
 
 0.994
yfeD
Similar to Yersinia pestis chelated iron transport system membrane protein YfeD or ypo2442 or y1894 SWALL:YFED_YERPE (SWALL:Q56955) (297 aa) fasta scores: E(): 3.6e-84, 76.67% id in 283 aa.
 
 
 0.771
yfeC
Similar to Yersinia pestis chelated iron transport system membrane protein YfeC or ypo2441 or y1895 SWALL:YFEC_YERPE (SWALL:Q56954) (294 aa) fasta scores: E(): 2.1e-93, 90.03% id in 281 aa.
 
 
 0.768
ECA3757
Similar to Escherichia coli putative ABC transporter membrane protein SWALL:CAD33756 (EMBL:AJ488511) (284 aa) fasta scores: E(): 2e-79, 80.35% id in 280 aa, and to Neisseria meningitidis putative ABC-transporter membrane protein nma0790 SWALL:Q9JVL3 (EMBL:AL162754) (291 aa) fasta scores: E(): 2.8e-54, 57.14% id in 280 aa.
  
 
 0.757
zur
Zinc uptake regulation protein; Similar to Escherichia coli, and Shigella flexneri zinc uptake regulation protein Zur or b4046 or sf4159 SWALL:ZUR_ECOLI (SWALL:P32692) (171 aa) fasta scores: E(): 8.5e-46, 68.63% id in 169 aa; Belongs to the Fur family.
  
  
 0.706
yfeA
Similar to Yersinia pestis periplasmic chelated iron-binding protein YfeA precursor yfea or ypo2439 or y1897 SWALL:YFEA_YERPE (SWALL:Q56952) (311 aa) fasta scores: E(): 1.6e-89, 78.85% id in 298 aa; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.662
ECA3758
ABC transporter substrate-binding protein; Similar to Escherichia coli putative periplasmic solute binding protein SWALL:CAD33757 (EMBL:AJ488511) (292 aa) fasta scores: E(): 1.2e-83, 78.42% id in 292 aa, and to Bradyrhizobium japonicum ABC transporter substrate-binding protein bll7769 SWALL:BAC53034 (EMBL:AP005963) (290 aa) fasta scores: E(): 1.7e-49, 48.09% id in 289 aa; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.662
ECA2483
Putative peptidase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical metalloprotease yeba precursor yeba or b1856 or c2270 or sf1866 SWALL:YEBA_ECOLI (SWALL:P24204) (440 aa) fasta scores: E(): 6.7e-128, 75.11% id in 442 aa, and to Salmonella typhimurium putative peptidase yeba or stm1890 SWALL:Q8ZNV9 (EMBL:AE008784) (439 aa) fasta scores: E(): 5.8e-128, 75.05% id in 441 aa.
  
    0.634
ubiB
Probable ubiquinone biosynthesis protein; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
      0.564
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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