STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2487LacI-family transcriptional regulator; Similar to Haemophilus influenzae galactose operon repressor GalR or GalS or hi0821 SWALL:GALR_HAEIN (SWALL:P31766) (332 aa) fasta scores: E(): 5.7e-09, 31.02% id in 303 aa, and to Staphylococcus xylosus probable catabolite control protein A CcpA SWALL:CCPA_STAXY (SWALL:Q56194) (329 aa) fasta scores: E(): 2.5e-08, 26.36% id in 311 aa. (320 aa)    
Predicted Functional Partners:
ECA1966
Putative transcriptional repressor; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri transcriptional repressor CytR or b3934 or c4887 or z5481 or ecs4861 or sf4012 SWALL:CYTR_ECOLI (SWALL:P06964) (341 aa) fasta scores: E(): 2.1e-16, 25.88% id in 340 aa, and to Yersinia pestis LacI-family regulatory protein ypo0846 or y3231 SWALL:Q8ZHP4 (EMBL:AJ414145) (360 aa) fasta scores: E(): 2.3e-80, 56.66% id in 360 aa.
  
     0.773
scrR
Sucrose operon repressor; Similar to Erwinia amylovora repressor scrR SWALL:Q9F497 (EMBL:AJ250722) (342 aa) fasta scores: E(): 4.7e-86, 65.46% id in 333 aa, and to Klebsiella pneumoniae sucrose operon repressor scrR SWALL:SCRR_KLEPN (SWALL:P37076) (334 aa) fasta scores: E(): 5.5e-88, 65.07% id in 335 aa.
  
     0.769
rafR
Similar to Escherichia coli raffinose operon repressor RafR SWALL:RAFR_ECOLI (SWALL:P21867) (335 aa) fasta scores: E(): 7.5e-64, 52.87% id in 331 aa.
  
     0.754
ECA4246
Putative sugar binding transcriptional regulator; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribose operon repressor RbsR or b3753 or c4681 or z5254 or ecs4695 or sf3836 SWALL:RBSR_ECOLI (SWALL:P25551) (329 aa) fasta scores: E(): 1.9e-18, 30.63% id in 333 aa, and to Rhizobium meliloti putative transcriptional regulator protein rb0352 or smb20366 SWALL:Q92WI7 (EMBL:AL603643) (334 aa) fasta scores: E(): 8.1e-42, 43.84% id in 317 aa.
  
     0.740
gntR-2
Partial CDS. Similar to the C-terminal regions of Escherichia coli, and Escherichia coli O6 gluconate utilization system Gnt-I transcriptional repressor GntR or b3438 or c4227 SWALL:GNTR_ECOLI (SWALL:P46860) (331 aa) fasta scores: E(): 4.1e-47, 78.36% id in 171 aa, and to Yersinia pestis gluconate utilization system Gnt-I transcriptional repressor gntr or ypo3955 or y3873 SWALL:Q8ZA63 (EMBL:AJ414160) (331 aa) fasta scores: E(): 1.8e-47, 78.94% id in 171 aa.
  
     0.739
gntR
Similar to Escherichia coli, and Escherichia coli O6 gluconate utilization system Gnt-I transcriptional repressor GntR or b3438 or c4227 SWALL:GNTR_ECOLI (SWALL:P46860) (331 aa) fasta scores: E(): 7.1e-94, 74.62% id in 331 aa.
  
     0.724
ECA0853
LacI-family transcriptional regulator; Similar to Escherichia coli ebg operon repressor EbgR or b3075 SWALL:EBGR_ECOLI (SWALL:P06846) (327 aa) fasta scores: E(): 3.5e-19, 32.71% id in 321 aa, and to Streptococcus thermophilus galactose operon repressor GalR SWALL:GALR_STRTR (SWALL:Q9ZB11) (331 aa) fasta scores: E(): 1.3e-12, 31.42% id in 350 aa.
  
     0.717
ECA2490
Putative maltoporin; Weakly similar to Klebsiella pneumoniae maltoporin precursor LamB SWALL:LAMB_KLEPN (SWALL:P31242) (429 aa) fasta scores: E(): 7.1e-14, 25.87% id in 398 aa, and to Escherichia coli maltoporin precursor LamB or MalB or b4036 SWALL:LAMB_ECOLI (SWALL:P02943) (446 aa) fasta scores: E(): 3.4e-05, 24.11% id in 394 aa.
  
     0.658
ECA3827
Fructose repressor (catabolite repressor/activator); Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri fructose repressor SWALL:FRUR_ECOLI (SWALL:P21168) (334 aa) fasta scores: E(): 3.9e-114, 85.88% id in 333 aa.
  
     0.658
ECA3772
Similar to Yersinia pestis LacI-family transcriptional regulatory protein ypo2568 SWALL:Q8ZDJ4 (EMBL:AJ414152) (344 aa) fasta scores: E(): 4.7e-70, 54.46% id in 336 aa, and to Escherichia coli O6 putative conserved protein c0337 SWALL:AAN78825 (EMBL:AE016756) (343 aa) fasta scores: E(): 1.6e-67, 56.45% id in 310 aa.
  
     0.622
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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