STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2498Similar to Yersinia pestis hypothetical protein ypo2052 or y2259 SWALL:Q8ZEV1 (EMBL:AJ414151) (271 aa) fasta scores: E(): 6.2e-52, 74.84% id in 159 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yece or stm1903 or sty2111 SWALL:Q8XFY8 (EMBL:AE008785) (272 aa) fasta scores: E(): 2.2e-46, 66.25% id in 160 aa. (164 aa)    
Predicted Functional Partners:
ECA2509
Similar to the C-terminal regions of Yersinia pestis hypothetical protein ypo2052 or y2259 SWALL:Q8ZEV1 (EMBL:AJ414151) (271 aa) fasta scores: E(): 1.2e-23, 58.26% id in 115 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yece or stm1903 or sty2111 SWALL:Q8XFY8 (EMBL:AE008785) (272 aa) fasta scores: E(): 2.6e-21, 54.78% id in 115 aa.
 
     0.976
ECA2497
Similar to Vibrio vulnificus predicted signal transduction protein vv12911 SWALL:AAO11244 (EMBL:AE016806) (404 aa) fasta scores: E(): 4.7e-60, 41.33% id in 404 aa, and to Bacillus subtilis hypothetical protein YuxH SWALL:YUXH_BACSU (SWALL:P14203) (409 aa) fasta scores: E(): 6e-34, 30.26% id in 413 aa.
       0.542
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.