STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmoBConserved hypothetical protein; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. (327 aa)    
Predicted Functional Partners:
cmoA
Conserved hypothetical protein; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).
 
 
 0.981
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein.
  
  
 0.725
ECA2170
Similar to Escherichia coli O6 hypothetical protein c3243 SWALL:AAN81695 (EMBL:AE016765) (370 aa) fasta scores: E(): 3.8e-47, 38.31% id in 355 aa, and to Clostridium acetobutylicum polya polymerase related protein cac0753 SWALL:Q97L13 (EMBL:AE007591) (363 aa) fasta scores: E(): 4e-41, 35.24% id in 349 aa.
   
   0.626
smtA
Putative S-adenosylmethionine-dependent methyltransferase; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.
 
   
 0.563
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
 
 0.537
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 
 0.529
hflD
Similar to Escherichia coli hypothetical protein ycfc or b1132 SWALL:YCFC_ECOLI (SWALL:P25746) (213 aa) fasta scores: E(): 2.3e-55, 71.98% id in 207 aa, and to Salmonella typhi hypothetical protein Sty1273 SWALL:Q8Z7H0 (EMBL:AL627269) (215 aa) fasta scores: E(): 7.5e-53, 68.59% id in 207 aa.
  
     0.463
ECA2694
Putative polyketide synthetase; Similar to Amycolatopsis mediterranei peptide synthetase BpsD SWALL:Q939Y2 (EMBL:Y16952) (581 aa) fasta scores: E(): 2e-44, 32.34% id in 575 aa, and to Myxococcus xanthus Ta1 SWALL:Q9Z5F4 (EMBL:AJ006977) (2393 aa) fasta scores: E(): 4e-51, 32.97% id in 552 aa.
   
 
 0.460
ECA2510
Similar to Yersinia pestis putative membrane protein ypo2051 or y2260 SWALL:Q8ZEV2 (EMBL:AJ414151) (131 aa) fasta scores: E(): 8.2e-45, 81.53% id in 130 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein yecn or stm1904 or sty2112 SWALL:Q8XFZ4 (EMBL:AE008785) (131 aa) fasta scores: E(): 1.2e-40, 71.75% id in 131 aa.
       0.458
ECA2365
Conserved hypothetical protein; Similar to Escherichia coli, and Shigella flexneri hypothetical protein ycgn or b1181 or sf1170 SWALL:AAN42786 (EMBL:AE000216) (153 aa) fasta scores: E(): 6.8e-54, 79.73% id in 148 aa, and to Yersinia pestis hypothetical protein ypo2083 or y2228 SWALL:AAM85788 (EMBL:AJ414151) (148 aa) fasta scores: E(): 7.8e-54, 80.4% id in 148 aa; Belongs to the UPF0260 family.
  
     0.434
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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