STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimJRibosomal-protein-alanine acetyltransferase; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri ribosomal-protein-alanine acetyltransferase RimJ or b1066 or z1703 or ecs1444 or sf1072 SWALL:RIMJ_ECOLI (SWALL:P09454) (194 aa) fasta scores: E(): 3.3e-67, 77.31% id in 194 aa. (194 aa)    
Predicted Functional Partners:
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
    
  0.950
ECA2523
Similar to Escherichia coli hypothetical protein yceh or b1067 SWALL:YCEH_ECOLI (SWALL:P29217) (215 aa) fasta scores: E(): 2e-56, 72.64% id in 212 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yceh or stm1168 or sty1206 SWALL:Q8XF09 (EMBL:AE008750) (215 aa) fasta scores: E(): 1.9e-54, 69.81% id in 212 aa; Belongs to the UPF0502 family.
 
  
 0.942
mviM
Similar to Salmonella typhimurium virulence factor MviM or stm1169 SWALL:MVIM_SALTY (SWALL:P37168) (307 aa) fasta scores: E(): 2.9e-71, 63.3% id in 297 aa, and to Escherichia coli virulence factor MviM homolog MviM or b1068 SWALL:MVIM_ECOLI (SWALL:P75931) (307 aa) fasta scores: E(): 1.2e-67, 60% id in 300 aa.
  
    0.719
ECA2678
Similar to Yersinia pestis hypothetical protein ypo1330 or y2853 SWALL:Q8ZGG7 (EMBL:AJ414147) (161 aa) fasta scores: E(): 1.3e-47, 77.7% id in 157 aa, and to Salmonella typhimurium putative cytoplasmic protein ybjn or stm0876 SWALL:Q8ZQK1 (EMBL:AE008736) (158 aa) fasta scores: E(): 4.7e-41, 67.92% id in 159 aa.
  
     0.647
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
   
 
 0.612
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.578
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
 
 0.572
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.556
ECA3012
Probable acetyltransferase; Similar to Escherichia coli ribosomal-protein-serine acetyltransferase RimL or b1427 SWALL:RIML_ECOLI (SWALL:P13857) (179 aa) fasta scores: E(): 3.6e-16, 38.88% id in 162 aa, and to Shigella flexneri acetylation of N-terminal serine of 30S ribosomal subunit protein l7, acetyl transferase RimL or sf1783 SWALL:AAN43352 (EMBL:AE015198) (183 aa) fasta scores: E(): 9.1e-18, 38.98% id in 177 aa.
  
   
 0.517
mdtH
Similar to Yersinia pestis putative membrane protein ypo2040 or y2272 SWALL:Q8ZEW3 (EMBL:AJ414151) (401 aa) fasta scores: E(): 1.1e-133, 82.91% id in 398 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical transport protein ycel or b1065 or c1332 SWALL:YCEL_ECOLI (SWALL:P77042) (402 aa) fasta scores: E(): 6.4e-126, 78.89% id in 398 aa.
 
     0.462
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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