STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pqiBSimilar to Escherichia coli paraquat-inducible protein B PqiB or Pqi5b or b0951 SWALL:PQIB_ECOLI (SWALL:P43671) (546 aa) fasta scores: E(): 3.8e-141, 66.72% id in 544 aa. (546 aa)    
Predicted Functional Partners:
pqiA
Paraquat-inducible protein A; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein A PqiA or Pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.7e-111, 66.42% id in 411 aa.
  
 0.955
ECA2531
Similar to Yersinia pestis putative lipoprotein protein ypo1422 or y2746 SWALL:Q8ZG84 (EMBL:AJ414148) (192 aa) fasta scores: E(): 4.8e-43, 62.43% id in 189 aa, and to Salmonella typhimurium, and Salmonella typhi putative outer membrane protein ymba or stm1065 or sty1086 SWALL:Q8XG15 (EMBL:AE008746) (187 aa) fasta scores: E(): 2.6e-38, 54.54% id in 187 aa.
 
   
 0.953
ECA2462
Similar to Yersinia pestis putative membrane protein ypo1702 or y1864 SWALL:AAM85431 (EMBL:AJ414150) (450 aa) fasta scores: E(): 7.4e-114, 68.47% id in 406 aa, and to Salmonella typhimurium putative inner membrane protein yebs or stm1848 SWALL:Q8ZNZ4 (EMBL:AE008782) (427 aa) fasta scores: E(): 1.7e-111, 65.69% id in 411 aa.
  
 0.825
ECA1565
Similar to Pseudomonas aeruginosa paraquat-inducible protein a SWALL:Q9APY1 (EMBL:AF241171) (237 aa) fasta scores: E(): 2.7e-27, 41.88% id in 191 aa, and to the C-terminal region of Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein a PqiA or Pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.4e-26, 42.71% id in 199 aa.
  
 0.812
ECA1566
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0603 or rs04842 SWALL:Q8Y1T6 (EMBL:AL646060) (292 aa) fasta scores: E(): 4.1e-18, 32.27% id in 189 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein a pqia or pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.4e-07, 23.4% id in 188 aa.
 
  
 0.801
ECA1563
Putative lipoprotein; Similar to Ralstonia solanacearum hypothetical protein rsc0600 rsc0600 or rs04845 SWALL:Q8Y1T9 (EMBL:AL646060) (211 aa) fasta scores: E(): 3.1e-14, 35.29% id in 187 aa, and to Pseudomonas putida conserved domain protein pp2578 SWALL:AAN68186 (EMBL:AE016783) (176 aa) fasta scores: E(): 1.9e-07, 32.5% id in 200 aa.
 
   
 0.626
rlmL
Putative RNA methylase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
       0.539
uup
Similar to Escherichia coli ABC transporter ATP-binding protein Uup or b0949 SWALL:UUP_ECOLI (SWALL:P43672) (635 aa) fasta scores: E(): 2.3e-168, 77.51% id in 636 aa.
       0.470
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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