STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2546Similar to Yersinia pestis putative exported protein ypo1407 or y2763 SWALL:AAM86315 (EMBL:AJ414148) (618 aa) fasta scores: E(): 1.4e-92, 60.48% id in 615 aa, and to Vibrio cholerae hypothetical protein Vc1268 SWALL:Q9KSI8 (EMBL:AE004206) (524 aa) fasta scores: E(): 7.1e-47, 36.56% id in 495 aa. (580 aa)    
Predicted Functional Partners:
ECA2545
Similar to Yersinia pestis putative exported protein ypo1408 or y2762 SWALL:Q8ZG97 (EMBL:AJ414148) (182 aa) fasta scores: E(): 4.6e-60, 82.41% id in 182 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ycbk or b0926 or c1068 or z1273 or ecs1009 or sf0923 SWALL:YCBK_ECOLI (SWALL:P75848) (182 aa) fasta scores: E(): 5.1e-56, 78.57% id in 182 aa.
 
   
 0.885
dacD
Similar to Escherichia coli penicillin-binding protein 4 precursor [includes: d-alanyl-d- alanine carboxypeptidase; D-alanyl-D-alanine-endopeptidase] DacB or b3182 SWALL:PBP4_ECOLI (SWALL:P24228) (477 aa) fasta scores: E(): 2.2e-146, 76.31% id in 477 aa; deleted EC_number 3.4.99.-.
  
  
 0.640
dacA
D-alanine carboxypeptidase; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 penicillin-binding protein 5 precursor DacA or Pfv or b0632 or c0722 or z0777 or ecs0670 SWALL:DACA_ECOLI (SWALL:P04287) (403 aa) fasta scores: E(): 4.5e-125, 79.9% id in 403 aa; Belongs to the peptidase S11 family.
   
 
 0.535
dacC
Similar to Escherichia coli penicillin-binding protein 6 precursor DacC or b0839 SWALL:DACC_ECOLI (SWALL:P08506) (400 aa) fasta scores: E(): 3.5e-111, 71.6% id in 398 aa; Belongs to the peptidase S11 family.
   
 
 0.535
ECA3471
Similar to Yersinia pestis putative exported protein ypo3241 SWALL:Q8ZBY9 (EMBL:AJ414156) (246 aa) fasta scores: E(): 8.2e-67, 67.48% id in 243 aa, and to Salmonella typhimurium, and Salmonella typhi putative periplasmic protein yafk or stm0312 or sty0357 SWALL:Q8XF45 (EMBL:AE008709) (246 aa) fasta scores: E(): 8.7e-57, 56.85% id in 248 aa.
  
   
 0.517
ECA1865
Similar to Yersinia pestis hypothetical protein y1940 SWALL:AAM85506 (EMBL:AE013797) (354 aa) fasta scores: E(): 4.6e-90, 72.64% id in 340 aa, and to Shigella flexneri orf, conserved hypothetical protein ycfs or sf1117 SWALL:AAN42735 (EMBL:AE015138) (321 aa) fasta scores: E(): 2.7e-68, 62.98% id in 308 aa.
 
  
 0.463
ECA2544
Conserved hypothetical protein; Similar to Yersinia pestis metallo-beta-lactamase superfamily protein ypo1409 or y2761 SWALL:Q8ZG96 (EMBL:AJ414148) (215 aa) fasta scores: E(): 8.9e-67, 72.55% id in 215 aa, and to Escherichia coli hypothetical protein ycbl or b0927 SWALL:YCBL_ECOLI (SWALL:P75849) (215 aa) fasta scores: E(): 3.5e-65, 70.23% id in 215 aa; putative metallo-beta-lactamase.
       0.460
ECA0821
Putative exported protein; Similar to Salmonella typhimurium, and Salmonella typhi putative periplasmic protein YbiS or SWALL:Q8XFD8 (EMBL:AE008734) (306 aa) fasta scores: E(): 1.9e-74, 67.64% id in 306 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein YbiS precursor SWALL:YBIS_ECOLI (SWALL:P75789) (306 aa) fasta scores: E(): 2.8e-74, 67.64% id in 306 aa.
 
  
 0.437
mepA
Penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. Belongs to the peptidase M74 family.
  
     0.427
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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