STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2555Similar to Yersinia pestis hypothetical protein Ypo1399 SWALL:Q8ZGA5 (EMBL:AJ414148) (60 aa) fasta scores: E(): 7.1e-19, 85.96% id in 57 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein ycar or stm0987 or sty0989 SWALL:Q8XEM5 (EMBL:AE008742) (60 aa) fasta scores: E(): 9.9e-17, 75.43% id in 57 aa; Belongs to the UPF0434 family. (60 aa)    
Predicted Functional Partners:
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
  
  
 0.902
ECA2558
Similar to Yersinia pestis putative membrane protein ypo1394 or y2778 SWALL:Q8ZGB0 (EMBL:AJ414148) (763 aa) fasta scores: E(): 7.2e-161, 50.19% id in 763 aa, and to Salmonella typhi putative competence-related protein sty0984 SWALL:Q8Z802 (EMBL:AL627268) (754 aa) fasta scores: E(): 7.2e-126, 42.52% id in 762 aa.
 
     0.711
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
     0.668
msbA
Lipid a export ATP-binding/permease; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
       0.544
ECA1809
Similar to Yersinia pestis hypothetical protein ypo1611 ypo1611 or y1770 SWALL:Q8ZFS7 (EMBL:AJ414149) (117 aa) fasta scores: E(): 3.7e-38, 86.84% id in 114 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical protein ycff ycff or stm1205 or sty1245 SWALL:Q8XER7 (EMBL:AE008752) (119 aa) fasta scores: E(): 9.5e-38, 83.47% id in 115 aa.
  
    0.499
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
  
 0.426
ECA3925
Similar to Salmonella typhi hypothetical protein Sty3249 SWALL:Q8Z3V2 (EMBL:AL627277) (187 aa) fasta scores: E(): 8.8e-53, 71.65% id in 187 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein yqge or b2948 or c3534 or sf2939 SWALL:YQGE_ECOLI (SWALL:P52049) (187 aa) fasta scores: E(): 1.6e-52, 69.51% id in 187 aa; Belongs to the UPF0301 (AlgH) family.
  
     0.411
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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