STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2564Similar to Yersinia pestis putative solute-binding iron ABC transport protein y4043 SWALL:AAM87587 (EMBL:AE014006) (329 aa) fasta scores: E(): 4.7e-74, 62.54% id in 315 aa, and to Brucella melitensis ferric anguibactin-binding protein bmeii0607 SWALL:Q8YCC5 (EMBL:AE009697) (293 aa) fasta scores: E(): 1.2e-49, 48.09% id in 289 aa. (316 aa)    
Predicted Functional Partners:
ECA2561
Similar to Yersinia pestis putative iron ABC transporter, ATP-binding protein ypo4025 or FecE or y4046 SWALL:AAM87590 (EMBL:AJ414160) (252 aa) fasta scores: E(): 2.1e-63, 72.61% id in 252 aa, and to Brucella melitensis iron bmeii0604 SWALL:Q8YCC8 (EMBL:AE009696) (252 aa) fasta scores: E(): 1.6e-54, 61.75% id in 251 aa.
 
  
 0.992
ECA2562
Similar to Yersinia pestis putative iron transport permease ypo4024 SWALL:Q8ZA02 (EMBL:AJ414160) (335 aa) fasta scores: E(): 3.2e-76, 66.13% id in 313 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu2475 or agr_c_4491 SWALL:Q8UCK8 (EMBL:AE009194) (322 aa) fasta scores: E(): 8.2e-58, 51.63% id in 306 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.992
ECA2563
Similar to Yersinia pestis putative iron transport permease ypo4023 or y4044 SWALL:Q8ZA03 (EMBL:AJ414160) (319 aa) fasta scores: E(): 2.3e-88, 73.18% id in 317 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu2474 or agr_c_4489 SWALL:Q8UCK9 (EMBL:AE009194) (321 aa) fasta scores: E(): 5.5e-66, 55.76% id in 321 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.992
fecB
iron(III) dicitrate-binding periplasmic protein; Similar to Escherichia coli iron FecB or b4290 SWALL:FECB_ECOLI (SWALL:P15028) (300 aa) fasta scores: E(): 1.1e-80, 70.66% id in 300 aa, and to Shigella flexneri 2a FecB SWALL:Q93F19 (EMBL:AF326777) (300 aa) fasta scores: E(): 4.8e-80, 70% id in 300 aa.
  
  
0.616
cbrD
Similar to Erwinia chrysanthemi achromobactin transport ATP-binding protein CbrD SWALL:CBRD_ERWCH (SWALL:Q47087) (273 aa) fasta scores: E(): 3.9e-64, 70.75% id in 253 aa.
 
  
 0.584
ECA2023
Putative siderophore-interacting protein; Similar to Vibrio vulnificus vulnibactin utilization protein ViuB or vv20837 SWALL:AAO07760 (EMBL:U32676) (271 aa) fasta scores: E(): 1.2e-26, 34.48% id in 261 aa, and to Stigmatella aurantiaca MxcB mxcB SWALL:Q9F641 (EMBL:AF299336) (270 aa) fasta scores: E(): 2.1e-21, 33.84% id in 260 aa.
 
  
 0.504
fhuC
Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 7.5e-80, 79.92% id in 264 aa.
 
  
 0.466
ECA0065
Similar to Pseudomonas aeruginosa hypothetical protein Pa2033 SWALL:Q9I282 (EMBL:AE004629) (302 aa) fasta scores: E(): 7.3e-48, 46.8% id in 297 aa, and to Corynebacterium glutamicum siderophore-interacting protein cgl0665 SWALL:Q8NSK6 (EMBL:AP005276) (299 aa) fasta scores: E(): 1.9e-29, 37.32% id in 292 aa, and to Escherichia coli hypothetical protein YqjH SWALL:YQJH_ECOLI (SWALL:Q46871) (254 aa) fasta scores: E(): 0.0064, 28.05% id in 303 aa.
 
  
 0.459
sbcB
Similar to Escherichia coli exodeoxyribonuclease I SbcB or XonA or CpeA or b2011 SWALL:EX1_ECOLI (SWALL:P04995) (475 aa) fasta scores: E(): 6.8e-147, 73.26% id in 475 aa.
       0.423
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.