STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citBTwo-component response regulator; Similar to Klebsiella pneumoniae transcriptional regulatory protein CitB SWALL:CITB_KLEPN (SWALL:P52688) (234 aa) fasta scores: E(): 7.4e-29, 41.59% id in 226 aa. (233 aa)    
Predicted Functional Partners:
citA
Similar to Klebsiella pneumoniae sensor kinase CitA SWALL:CITA_KLEPN (SWALL:P52687) (547 aa) fasta scores: E(): 4.7e-85, 44.8% id in 529 aa.
 
  
 0.989
dcuS
Two-component sensor kinase; Similar to Escherichia coli, and Escherichia coli O157:H7 sensor protein DcuS or b4125 or z5727 or ecs5107 SWALL:DCUS_ECOLI (SWALL:P39272) (543 aa) fasta scores: E(): 4.2e-114, 56.84% id in 533 aa.
 
 
 0.940
citW
Similar to Klebsiella pneumoniae citrate/acetate antiporter CitW SWALL:Q8VS41 (EMBL:AF411142) (454 aa) fasta scores: E(): 1.9e-136, 76.75% id in 456 aa.
 
    0.602
maeN
Similar to Bacillus subtilis Na(+)-malate symporter MaeN SWALL:MAEN_BACSU (SWALL:O05256) (448 aa) fasta scores: E(): 2.5e-95, 58.93% id in 414 aa.
 
    0.560
glnG
Nitrogen regulation two-component system, response regulator; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
  
   
 0.504
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
     
 0.497
rpfA
Two-component sensor kinase and response regulator; Similar to Pectobacterium carotovorum subsp. carotovorum sensor/regulator protein RpfA SWALL:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0, 92.88% id in 928 aa, and to Pectobacterium carotovorum subsp. carotovorum sensory kinase ExpS SWALL:O32556 (EMBL:Y13670) (928 aa) fasta scores: E(): 0, 95.36% id in 928 aa.
     
 0.494
baeS
Two-component system sensor kinase; Similar to Escherichia coli sensor protein BaeS or b2078 SWALL:BAES_ECOLI (SWALL:P30847) (467 aa) fasta scores: E(): 3.1e-113, 65.06% id in 458 aa.
 
   
 0.481
ECA3270
Putative exported protein; Similar to Rhizobium meliloti hypothetical protein r00959 or smc00038 SWALL:Q92KJ3 (EMBL:AL591785) (772 aa) fasta scores: E(): 1e-48, 35.35% id in 461 aa, and to Xanthomonas campestris c-di-gmp phosphodiesterase A PdeA or xcc1865 SWALL:Q8P9J8 (EMBL:AE012289) (726 aa) fasta scores: E(): 1.1e-41, 31.81% id in 462 aa.
 
   
 0.422
narL
Nitrate/nitrite response regulator; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri nitrate/nitrite response regulator protein NarL or FrdR or b1221 or c1681 or z1996 or ecs1726 or sf1224 SWALL:NARL_ECOLI (SWALL:P10957) (216 aa) fasta scores: E(): 2.2e-60, 80.46% id in 215 aa.
  
   
 0.402
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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