STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2599Bacteriophage regulatory protein; Similar to Escherichia coli prophage P2 Ogr protein OgrK or b2082 SWALL:OGRK_ECOLI (SWALL:P37057) (72 aa) fasta scores: E(): 2.1e-07, 50.98% id in 51 aa, and to Salmonella typhi bacteriophage gene regulatory protein sty4826 SWALL:Q8Z107 (EMBL:AL627283) (79 aa) fasta scores: E(): 2.2e-08, 48.43% id in 64 aa, and to Bacteriophage 186 late control gene B protein B SWALL:VPB_BP186 (SWALL:P08711) (72 aa) fasta scores: E(): 7.6e-08, 45.76% id in 59 aa. Also similar to ECA0414 (39.726% id. in 55 aa overlap), and to ECA3454 (43.836% id. in 50 aa overlap), and [...] (82 aa)    
Predicted Functional Partners:
ECA2600
Similar to Bacteriophage 186 late control gene D protein D SWALL:VPD_BP186 (SWALL:P21679) (389 aa) fasta scores: E(): 1.2e-40, 52.23% id in 358 aa, and to Salmonella typhi putative regulator of late gene expression sty3702 or sty2882 SWALL:Q8XG84 (EMBL:AL627279) (366 aa) fasta scores: E(): 2.1e-66, 53.48% id in 344 aa.
  
    0.737
ECA2606
Putative bacteriophage tail fiber protein U; Similar to Bacteriophage P2 gpu U SWALL:O64315 (EMBL:AF063097) (159 aa) fasta scores: E(): 4.5e-20, 48.8% id in 125 aa. Also similar to Bacteriophage 186 F protein F SWALL:O80317 (EMBL:U32222) (161 aa) fasta scores: E(): 2.4e-22, 44.78% id in 163 aa.
  
    0.631
ECA2603
Putative phage tail protein E; Similar to Bacteriophage P2 Gpe SWALL:O64313 (EMBL:AF063097) (91 aa) fasta scores: E(): 1.8e-05, 40% id in 85 aa, and to Salmonella typhi putative phage tail protein sty3698 or sty2886 SWALL:Q8XFW3 (EMBL:AL627279) (100 aa) fasta scores: E(): 2e-06, 40.74% id in 81 aa.
  
    0.540
ECA2622
Similar to Bacteriophage P2 presumed capsid scaffolding protein O SWALL:VPO_BPP2 (SWALL:P25478) (284 aa) fasta scores: E(): 7.4e-21, 34.16% id in 281 aa.
   
    0.525
ECA2611
Similar to Bacteriophage P2 baseplate assembly protein W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 2.5e-15, 46.72% id in 107 aa, and to Salmonella typhi phage baseplate assembly protein sty3688 SWALL:Q8Z345 (EMBL:AL627279) (119 aa) fasta scores: E(): 4.7e-16, 45.29% id in 117 aa.
   
    0.523
ECA2627
Similar to Bacteriophage P2 replication gene A protein A SWALL:VPA_BPP2 (SWALL:Q06419) (761 aa) fasta scores: E(): 4e-50, 32.96% id in 731 aa, and to Escherichia coli O6 putative replication protein for prophage c0942 SWALL:AAN79415 (EMBL:AE016758) (804 aa) fasta scores: E(): 2.1e-91, 37.13% id in 797 aa.
   
    0.523
ECA2614
Similar to Bacteriophage P2 tail completion protein R SWALL:VPR_BPP2 (SWALL:P36933) (155 aa) fasta scores: E(): 9.1e-12, 37.31% id in 134 aa, and to Salmonella typhi putative phage tail protein sty3685 SWALL:Q8Z348 (EMBL:AL627279) (143 aa) fasta scores: E(): 7.3e-12, 38.16% id in 131 aa.
   
    0.514
ECA2601
Similar to Bacteriophage P2 major tail sheath protein FI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 3.9e-74, 50% id in 392 aa, and to Escherichia coli O157:H7 putative tail sheath protein of prophage cp-933t z2991 or ecs2645 SWALL:Q8XBE2 (EMBL:AE005413) (394 aa) fasta scores: E(): 1.2e-109, 69.19% id in 396 aa.
  
    0.509
ECA2621
Similar to Bacteriophage P2 major capsid protein precursor N SWALL:VPN_BPP2 (SWALL:P25477) (357 aa) fasta scores: E(): 6.7e-48, 40.69% id in 344 aa.
   
    0.505
ECA2613
Similar to Bacteriophage P2 tail completion protein s S SWALL:VPS_BPP2 (SWALL:P36934) (150 aa) fasta scores: E(): 0.017, 24.02% id in 204 aa and to Bacteriophage phi CTX orf14 SWALL:Q9ZXL2 (EMBL:AB008550) (156 aa) fasta scores: E(): 1.7e-07, 32.02% id in 203 aa.
   
  
 0.503
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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