STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2601Similar to Bacteriophage P2 major tail sheath protein FI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 3.9e-74, 50% id in 392 aa, and to Escherichia coli O157:H7 putative tail sheath protein of prophage cp-933t z2991 or ecs2645 SWALL:Q8XBE2 (EMBL:AE005413) (394 aa) fasta scores: E(): 1.2e-109, 69.19% id in 396 aa. (394 aa)    
Predicted Functional Partners:
ECA2602
Similar to Bacteriophage P2 major tail tube protein FII SWALL:VPF2_BPP2 (SWALL:P22502) (171 aa) fasta scores: E(): 8e-20, 41.52% id in 171 aa, and to Escherichia coli O157:H7 putative tail fiber component of prophage cp-933t z2990 or ecs2644 SWALL:Q8XBE3 (EMBL:AE005413) (170 aa) fasta scores: E(): 7.5e-42, 65.88% id in 170 aa.
 
 
 0.984
ECA2600
Similar to Bacteriophage 186 late control gene D protein D SWALL:VPD_BP186 (SWALL:P21679) (389 aa) fasta scores: E(): 1.2e-40, 52.23% id in 358 aa, and to Salmonella typhi putative regulator of late gene expression sty3702 or sty2882 SWALL:Q8XG84 (EMBL:AL627279) (366 aa) fasta scores: E(): 2.1e-66, 53.48% id in 344 aa.
 
 
 0.964
ECA2606
Putative bacteriophage tail fiber protein U; Similar to Bacteriophage P2 gpu U SWALL:O64315 (EMBL:AF063097) (159 aa) fasta scores: E(): 4.5e-20, 48.8% id in 125 aa. Also similar to Bacteriophage 186 F protein F SWALL:O80317 (EMBL:U32222) (161 aa) fasta scores: E(): 2.4e-22, 44.78% id in 163 aa.
 
 
 0.958
ECA2611
Similar to Bacteriophage P2 baseplate assembly protein W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 2.5e-15, 46.72% id in 107 aa, and to Salmonella typhi phage baseplate assembly protein sty3688 SWALL:Q8Z345 (EMBL:AL627279) (119 aa) fasta scores: E(): 4.7e-16, 45.29% id in 117 aa.
 
 
 0.949
ECA2618
Similar to Bacteriophage P2 tail protein Gpx SWALL:VPX_BPP2 (SWALL:P51772) (67 aa) fasta scores: E(): 2.8e-10, 54.54% id in 66 aa and Bacteriophage 186 orf23 SWALL:O80307 (EMBL:U32222) (67 aa) fasta scores: E(): 2.4e-10, 50% id in 66 aa.
 
   0.939
ECA3735
Putative bacteriophage protein; Similar to Bacteriophage P2 GpD SWALL:VPD_BPP2 (SWALL:P10312) (387 aa) fasta scores: E(): 7.1e-11, 24.45% id in 364 aa and to Salmonella typhi putative protein sty1632 SWALL:Q8Z6T4 (EMBL:AL627270) (384 aa) fasta scores: E(): 4.1e-106, 76.44% id in 382 aa.
 
 
 0.935
ECA3730
Similar to Bacteriophage P2 major tail tube protein FII SWALL:VPF2_BPP2 (SWALL:P22502) (171 aa) fasta scores: E(): 4e-09, 28.65% id in 164 aa and to Erwinia carotovora tail core protein SWALL:Q9WXA0 (EMBL:AB017338) (174 aa) fasta scores: E(): 2.2e-60, 82.75% id in 174 aa.
 
 
 0.930
ECA2609
Similar to Bacteriophage P2 tail protein I SWALL:VPI_BPP2 (SWALL:P26701) (176 aa) fasta scores: E(): 1.8e-40, 57.14% id in 175 aa, and to Escherichia coli O6 putative phage tail protein c0966 SWALL:AAN79439 (EMBL:AE016758) (201 aa) fasta scores: E(): 6e-49, 57.28% id in 199 aa.
 
 
 0.928
ECA2603
Putative phage tail protein E; Similar to Bacteriophage P2 Gpe SWALL:O64313 (EMBL:AF063097) (91 aa) fasta scores: E(): 1.8e-05, 40% id in 85 aa, and to Salmonella typhi putative phage tail protein sty3698 or sty2886 SWALL:Q8XFW3 (EMBL:AL627279) (100 aa) fasta scores: E(): 2e-06, 40.74% id in 81 aa.
 
    0.926
ECA3738
Similar to Bacteriophage P2 baseplate assembly protein w W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 0.0098, 36.78% id in 87 aa and Erwinia carotovora, and Pectobacterium carotovorum subsp. carotovorum baseplate SWALL:Q9WXA2 (EMBL:AB017338) (115 aa) fasta scores: E(): 7.1e-37, 75.65% id in 115 aa.
 
 
 0.926
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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