STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2617Phage lysis protein Y, holin; Similar to Bacteriophage P2 holin Y SWALL:HOLI_BPP2 (SWALL:P51773) (93 aa) fasta scores: E(): 3.2e-23, 78.02% id in 91 aa, and to Bacteriophage 186 orf24 SWALL:O80308 (EMBL:U32222) (98 aa) fasta scores: E(): 1.3e-23, 72.16% id in 97 aa. (102 aa)    
Predicted Functional Partners:
ECA2619
Similar to Bacteriophage P2 head completion/stabilization protein L SWALL:VPL_BPP2 (SWALL:P25475) (169 aa) fasta scores: E(): 1.8e-13, 31.28% id in 163 aa and Bacteriophage 186 Q protein Q SWALL:O80306 (EMBL:U32222) (168 aa) fasta scores: E(): 9.4e-14, 33.33% id in 144 aa.
       0.801
ECA2618
Similar to Bacteriophage P2 tail protein Gpx SWALL:VPX_BPP2 (SWALL:P51772) (67 aa) fasta scores: E(): 2.8e-10, 54.54% id in 66 aa and Bacteriophage 186 orf23 SWALL:O80307 (EMBL:U32222) (67 aa) fasta scores: E(): 2.4e-10, 50% id in 66 aa.
       0.796
ECA2614A
Conserved phage protein (thought to be involved in host lysis); Similar to Bacteriophage P2 LysC SWALL:Q8LTD0 (EMBL:AF063097) (96 aa) fasta scores: E(): 8.4e-10, 40.69% id in 86 aa.
       0.754
ECA2615
Putative phage encoded host lysis, regulatory protein; Similar to Bacteriophage P2 protein LysB SWALL:LYSB_BPP2 (SWALL:P51770) (141 aa) fasta scores: E(): 0.023, 28.77% id in 139 aa, and to Salmonella typhi putative regulatory protein sty3684 SWALL:Q8Z349 (EMBL:AL627279) (142 aa) fasta scores: E(): 1.2e-16, 51.16% id in 129 aa.
       0.754
ECA2607
Similar to Bacteriophage P2 probable tail fiber assembly protein G SWALL:TFA_BPP2 (SWALL:P26699) (175 aa) fasta scores: E(): 0.00029, 34.01% id in 147 aa, and to Bacteriophage lambda tail fiber assembly protein tfA SWALL:TFA_LAMBD (SWALL:P03740) (194 aa) fasta scores: E(): 1.3e-18, 36.11% id in 180 aa.
       0.741
ECA2608
Similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 9.6e-27, 37.55% id in 442 aa and Bacteriophage GMSE-1 probable tail fiber protein SWALL:Q9B027 (EMBL:AF311651) (497 aa) fasta scores: E(): 4.1e-49, 56.43% id in 264 aa.
       0.741
ECA2609
Similar to Bacteriophage P2 tail protein I SWALL:VPI_BPP2 (SWALL:P26701) (176 aa) fasta scores: E(): 1.8e-40, 57.14% id in 175 aa, and to Escherichia coli O6 putative phage tail protein c0966 SWALL:AAN79439 (EMBL:AE016758) (201 aa) fasta scores: E(): 6e-49, 57.28% id in 199 aa.
       0.741
ECA2610
Similar to Bacteriophage P2 baseplate assembly protein GpJ SWALL:VPJ_BPP2 (SWALL:P51767) (302 aa) fasta scores: E(): 1.8e-56, 54.48% id in 301 aa and to Bacteriophage 186 GpL SWALL:Q37840 (EMBL:U32222) (302 aa) fasta scores: E(): 3.2e-57, 54.81% id in 301 aa.
       0.741
ECA2611
Similar to Bacteriophage P2 baseplate assembly protein W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 2.5e-15, 46.72% id in 107 aa, and to Salmonella typhi phage baseplate assembly protein sty3688 SWALL:Q8Z345 (EMBL:AL627279) (119 aa) fasta scores: E(): 4.7e-16, 45.29% id in 117 aa.
       0.741
ECA2612
Similar to Bacteriophage P2 baseplate assembly protein V SWALL:VPV_BPP2 (SWALL:P31340) (211 aa) fasta scores: E(): 5.6e-19, 42.64% id in 204 aa, and to Salmonella typhi putative phage baseplate assembly protein sty3687 SWALL:Q8Z346 (EMBL:AL627279) (192 aa) fasta scores: E(): 7e-20, 37.89% id in 190 aa.
       0.741
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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