STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2621Similar to Bacteriophage P2 major capsid protein precursor N SWALL:VPN_BPP2 (SWALL:P25477) (357 aa) fasta scores: E(): 6.7e-48, 40.69% id in 344 aa. (349 aa)    
Predicted Functional Partners:
ECA2622
Similar to Bacteriophage P2 presumed capsid scaffolding protein O SWALL:VPO_BPP2 (SWALL:P25478) (284 aa) fasta scores: E(): 7.4e-21, 34.16% id in 281 aa.
 
  
 0.997
ECA2620
Similar to Bacteriophage P2 terminase, endonuclease subunit M SWALL:VPM_BPP2 (SWALL:P25476) (247 aa) fasta scores: E(): 5.6e-20, 36.36% id in 220 aa and Bacteriophage 299 small terminase subunit M SWALL:Q94MK1 (EMBL:AJ298566) (247 aa) fasta scores: E(): 4.3e-20, 36.36% id in 220 aa.
 
    0.996
ECA2624
Similar to Bacteriophage P2 presumed portal vertex protein Q SWALL:VPQ_BPP2 (SWALL:P25480) (344 aa) fasta scores: E(): 3.8e-60, 44.89% id in 343 aa and Bacteriophage 186 capsid portal protein W SWALL:Q37851 (EMBL:U32222) (340 aa) fasta scores: E(): 1e-61, 46.11% id in 347 aa.
 
  
 0.996
ECA2623
Similar to Bacteriophage P2 terminase, ATPase subunit P SWALL:VPP_BPP2 (SWALL:P25479) (590 aa) fasta scores: E(): 8e-79, 45.26% id in 581 aa, and to Bacteriophage phi CTX pseudomonas aeruginosa phage phi ctx SWALL:Q9ZXM5 (EMBL:AB008550) (594 aa) fasta scores: E(): 1.7e-79, 45.81% id in 585 aa.
 
  
 0.995
ECA2614
Similar to Bacteriophage P2 tail completion protein R SWALL:VPR_BPP2 (SWALL:P36933) (155 aa) fasta scores: E(): 9.1e-12, 37.31% id in 134 aa, and to Salmonella typhi putative phage tail protein sty3685 SWALL:Q8Z348 (EMBL:AL627279) (143 aa) fasta scores: E(): 7.3e-12, 38.16% id in 131 aa.
 
    0.994
ECA2619
Similar to Bacteriophage P2 head completion/stabilization protein L SWALL:VPL_BPP2 (SWALL:P25475) (169 aa) fasta scores: E(): 1.8e-13, 31.28% id in 163 aa and Bacteriophage 186 Q protein Q SWALL:O80306 (EMBL:U32222) (168 aa) fasta scores: E(): 9.4e-14, 33.33% id in 144 aa.
 
  
 0.994
ECA2611
Similar to Bacteriophage P2 baseplate assembly protein W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 2.5e-15, 46.72% id in 107 aa, and to Salmonella typhi phage baseplate assembly protein sty3688 SWALL:Q8Z345 (EMBL:AL627279) (119 aa) fasta scores: E(): 4.7e-16, 45.29% id in 117 aa.
 
    0.993
ECA2613
Similar to Bacteriophage P2 tail completion protein s S SWALL:VPS_BPP2 (SWALL:P36934) (150 aa) fasta scores: E(): 0.017, 24.02% id in 204 aa and to Bacteriophage phi CTX orf14 SWALL:Q9ZXL2 (EMBL:AB008550) (156 aa) fasta scores: E(): 1.7e-07, 32.02% id in 203 aa.
 
    0.993
ECA2618
Similar to Bacteriophage P2 tail protein Gpx SWALL:VPX_BPP2 (SWALL:P51772) (67 aa) fasta scores: E(): 2.8e-10, 54.54% id in 66 aa and Bacteriophage 186 orf23 SWALL:O80307 (EMBL:U32222) (67 aa) fasta scores: E(): 2.4e-10, 50% id in 66 aa.
 
  
 0.993
ECA2609
Similar to Bacteriophage P2 tail protein I SWALL:VPI_BPP2 (SWALL:P26701) (176 aa) fasta scores: E(): 1.8e-40, 57.14% id in 175 aa, and to Escherichia coli O6 putative phage tail protein c0966 SWALL:AAN79439 (EMBL:AE016758) (201 aa) fasta scores: E(): 6e-49, 57.28% id in 199 aa.
 
    0.991
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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