STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2625Similar to Bacteriophage PSA methylase Met SWALL:Q8W5X3 (EMBL:AJ312240) (270 aa) fasta scores: E(): 1.3e-07, 35.08% id in 114 aa, and to uncultured bacterium Upf31.0 protein upf31.0 SWALL:Q8RSH9 (EMBL:AJ431260) (224 aa) fasta scores: E(): 2e-22, 45.88% id in 231 aa. (229 aa)    
Predicted Functional Partners:
ECA2626
Putative phage-related protein; Similar to the N-terminal regions of many including Heliobacillus mobilis ATP-dependent clp protease ATP-binding subunit clpx SWALL:AAN87458 (EMBL:AY142854) (420 aa) fasta scores: E(): 0.2, 46.15% id in 39 aa, and to Brucella abortus ClpX SWALL:Q9L7X5 (EMBL:AF218420) (423 aa) fasta scores: E(): 0.28, 42% id in 50 aa.
       0.773
ECA2627
Similar to Bacteriophage P2 replication gene A protein A SWALL:VPA_BPP2 (SWALL:Q06419) (761 aa) fasta scores: E(): 4e-50, 32.96% id in 731 aa, and to Escherichia coli O6 putative replication protein for prophage c0942 SWALL:AAN79415 (EMBL:AE016758) (804 aa) fasta scores: E(): 2.1e-91, 37.13% id in 797 aa.
  
  
 0.626
ECA2628
Conserved phage protein; Similar to Bacteriophage 186 hypothetical gp84 SWALL:CP84_BP186 (SWALL:P41062) (334 aa) fasta scores: E(): 1.7e-98, 69.69% id in 330 aa.
 
     0.624
ECA2631
Phage-related protein; Similar to Bacteriophage 186 hypothetical gp79 SWALL:CP79_BP186 (SWALL:P21682) (77 aa) fasta scores: E(): 0.00013, 40.62% id in 64 aa, and to Salmonella typhimurium fels-2 prophage: similar to protein in phage 186 stm2732 SWALL:Q8ZMS1 (EMBL:AE008824) (77 aa) fasta scores: E(): 0.0014, 35.52% id in 76 aa.
  
    0.564
ECA2630
Phage-related protein; Similar to Salmonella typhimurium phage ST64B Sb30 SWALL:AAL25908 (EMBL:AY055382) (189 aa) fasta scores: E(): 1e-30, 50% id in 186 aa, and in parts to many other Bacteriophage exodeoxyribonuclease. e.g. Bacteriophage T4 DexA SWALL:EXOD_BPT4 (SWALL:P04536) (227 aa) fasta scores: E(): 0.00055, 26.19% id in 210 aa and to the C-terminal region of Escherichia coli O157:H7 putative exonuclease VIII, ds DNA exonuclease, 5'--> 3' specific encoded by prophage CP-933o exoo or z2037 or ecs1759 SWALL:Q8X287 (EMBL:AE005343) (823 aa) fasta scores: E(): 1.2e-27, 44.44% id in 189 aa.
       0.550
ECA2629
Phage DNA adenine methylase; Similar to Escherichia coli, and Escherichia coli O157:H7 DNA adenine methylase Dam or b3387 or z4740 or ecs4229 SWALL:DMA_ECOLI (SWALL:P00475) (278 aa) fasta scores: E(): 1e-47, 47.68% id in 281 aa.
       0.538
ECA2624
Similar to Bacteriophage P2 presumed portal vertex protein Q SWALL:VPQ_BPP2 (SWALL:P25480) (344 aa) fasta scores: E(): 3.8e-60, 44.89% id in 343 aa and Bacteriophage 186 capsid portal protein W SWALL:Q37851 (EMBL:U32222) (340 aa) fasta scores: E(): 1e-61, 46.11% id in 347 aa.
 
    0.524
ECA2632
Phage-related protein; Similar to Salmonella typhimurium fels-2 prophage: similar to e. coli retron ec67 stm2733 SWALL:Q8ZMS0 (EMBL:AE008824) (113 aa) fasta scores: E(): 4e-17, 54.05% id in 111 aa, and to Salmonella typhi hypothetical protein Sty3664 SWALL:Q8Z369 (EMBL:AL627279) (113 aa) fasta scores: E(): 6.4e-17, 54.05% id in 111 aa.
  
    0.510
ECA2611
Similar to Bacteriophage P2 baseplate assembly protein W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 2.5e-15, 46.72% id in 107 aa, and to Salmonella typhi phage baseplate assembly protein sty3688 SWALL:Q8Z345 (EMBL:AL627279) (119 aa) fasta scores: E(): 4.7e-16, 45.29% id in 117 aa.
 
    0.425
ECA2601
Similar to Bacteriophage P2 major tail sheath protein FI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 3.9e-74, 50% id in 392 aa, and to Escherichia coli O157:H7 putative tail sheath protein of prophage cp-933t z2991 or ecs2645 SWALL:Q8XBE2 (EMBL:AE005413) (394 aa) fasta scores: E(): 1.2e-109, 69.19% id in 396 aa.
 
    0.401
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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