STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2633Phage-related protein; Similar to Bacteriophage 186 host filamentation protein Fil SWALL:VFIL_BP186 (SWALL:P15236) (75 aa) fasta scores: E(): 5.7, 34.28% id in 35 aa, and to Salmonella typhimurium hypothetical protein Stm2735 stm2735 SWALL:Q8ZMR8 (EMBL:AE008824) (77 aa) fasta scores: E(): 1.7, 40% id in 30 aa. (41 aa)    
Predicted Functional Partners:
ECA2634
Phage-related hypothetical protein; No significant database matches.
       0.773
ECA2635
Similar to Bacteriophage P2 regulatory protein Cox SWALL:VCOX_BPP2 (SWALL:P07695) (91 aa) fasta scores: E(): 0.0011, 33.33% id in 81 aa, and to Bacteriophage P2 Cox protein Cox SWALL:Q94MG1 (EMBL:AJ306907) (91 aa) fasta scores: E(): 0.0034, 32.09% id in 81 aa.
       0.773
ECA2632
Phage-related protein; Similar to Salmonella typhimurium fels-2 prophage: similar to e. coli retron ec67 stm2733 SWALL:Q8ZMS0 (EMBL:AE008824) (113 aa) fasta scores: E(): 4e-17, 54.05% id in 111 aa, and to Salmonella typhi hypothetical protein Sty3664 SWALL:Q8Z369 (EMBL:AL627279) (113 aa) fasta scores: E(): 6.4e-17, 54.05% id in 111 aa.
       0.556
ECA2636
Similar to Bacteriophage P2 repressor protein C SWALL:RPC_BPP2 (SWALL:P04132) (99 aa) fasta scores: E(): 3.7e-15, 48.48% id in 99 aa.
       0.542
ECA2627
Similar to Bacteriophage P2 replication gene A protein A SWALL:VPA_BPP2 (SWALL:Q06419) (761 aa) fasta scores: E(): 4e-50, 32.96% id in 731 aa, and to Escherichia coli O6 putative replication protein for prophage c0942 SWALL:AAN79415 (EMBL:AE016758) (804 aa) fasta scores: E(): 2.1e-91, 37.13% id in 797 aa.
       0.424
ECA2628
Conserved phage protein; Similar to Bacteriophage 186 hypothetical gp84 SWALL:CP84_BP186 (SWALL:P41062) (334 aa) fasta scores: E(): 1.7e-98, 69.69% id in 330 aa.
       0.424
ECA2629
Phage DNA adenine methylase; Similar to Escherichia coli, and Escherichia coli O157:H7 DNA adenine methylase Dam or b3387 or z4740 or ecs4229 SWALL:DMA_ECOLI (SWALL:P00475) (278 aa) fasta scores: E(): 1e-47, 47.68% id in 281 aa.
       0.424
ECA2630
Phage-related protein; Similar to Salmonella typhimurium phage ST64B Sb30 SWALL:AAL25908 (EMBL:AY055382) (189 aa) fasta scores: E(): 1e-30, 50% id in 186 aa, and in parts to many other Bacteriophage exodeoxyribonuclease. e.g. Bacteriophage T4 DexA SWALL:EXOD_BPT4 (SWALL:P04536) (227 aa) fasta scores: E(): 0.00055, 26.19% id in 210 aa and to the C-terminal region of Escherichia coli O157:H7 putative exonuclease VIII, ds DNA exonuclease, 5'--> 3' specific encoded by prophage CP-933o exoo or z2037 or ecs1759 SWALL:Q8X287 (EMBL:AE005343) (823 aa) fasta scores: E(): 1.2e-27, 44.44% id in 189 aa.
       0.424
ECA2631
Phage-related protein; Similar to Bacteriophage 186 hypothetical gp79 SWALL:CP79_BP186 (SWALL:P21682) (77 aa) fasta scores: E(): 0.00013, 40.62% id in 64 aa, and to Salmonella typhimurium fels-2 prophage: similar to protein in phage 186 stm2732 SWALL:Q8ZMS1 (EMBL:AE008824) (77 aa) fasta scores: E(): 0.0014, 35.52% id in 76 aa.
       0.424
ECA2637
Similar to Bacteriophage P2 integrase Int SWALL:VINT_BPP2 (SWALL:P36932) (337 aa) fasta scores: E(): 1.2e-68, 54.29% id in 326 aa; Belongs to the 'phage' integrase family.
       0.417
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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