STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2637Similar to Bacteriophage P2 integrase Int SWALL:VINT_BPP2 (SWALL:P36932) (337 aa) fasta scores: E(): 1.2e-68, 54.29% id in 326 aa; Belongs to the 'phage' integrase family. (328 aa)    
Predicted Functional Partners:
xerC
Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerD binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerC specifically exchanges the t [...]
 
 
 
 0.861
ECA2627
Similar to Bacteriophage P2 replication gene A protein A SWALL:VPA_BPP2 (SWALL:Q06419) (761 aa) fasta scores: E(): 4e-50, 32.96% id in 731 aa, and to Escherichia coli O6 putative replication protein for prophage c0942 SWALL:AAN79415 (EMBL:AE016758) (804 aa) fasta scores: E(): 2.1e-91, 37.13% id in 797 aa.
 
  
 0.845
ECA2622
Similar to Bacteriophage P2 presumed capsid scaffolding protein O SWALL:VPO_BPP2 (SWALL:P25478) (284 aa) fasta scores: E(): 7.4e-21, 34.16% id in 281 aa.
  
  
 0.679
ECA4283
Probable integrase/recombinase; Similar to Photorhabdus luminescens Int SWALL:AAN64203 (EMBL:AY144117) (465 aa) fasta scores: E(): 1.2e-82, 63.42% id in 339 aa, and to Ralstonia solanacearum probable integrase/recombinase protein rsp0090 or rs05531 SWALL:Q8XTL6 (EMBL:AL646076) (347 aa) fasta scores: E(): 9.1e-47, 44.09% id in 322 aa. Also similar to ECA3389, (68.421% id), ECA3399 (66.477% id), ECA3406 (66.765% id), ECA3415 (66.765% id), ECA4292 (100.000% id); Belongs to the 'phage' integrase family.
  
   
 0.671
ECA4292
Probable integrase/recombinase; Similar to Photorhabdus luminescens Int SWALL:AAN64203 (EMBL:AY144117) (465 aa) fasta scores: E(): 1.3e-82, 63.42% id in 339 aa, and to Ralstonia solanacearum probable integrase/recombinase protein rsp0090 or rs05531 SWALL:Q8XTL6 (EMBL:AL646076) (347 aa) fasta scores: E(): 9.2e-47, 44.09% id in 322 aa. Also similar to ECA3389, (68.421% id), ECA3399 (66.477% id), ECA3406 (66.765% id), ECA3415 (66.765% id), ECA4283 (100.000% id).
  
   
 0.671
ECA3406
Similar to Ralstonia solanacearum probable integrase/recombinase protein rsp0090 or rs05531 SWALL:Q8XTL6 (EMBL:AL646076) (347 aa) fasta scores: E(): 3e-52, 48.28% id in 321 aa, and to Photorhabdus luminescens Int SWALL:AAN64203 (EMBL:AY144117) (465 aa) fasta scores: E(): 7.6e-79, 63.66% id in 322 aa. Also similar to ECA3389 (91.150% id), ECA3399 (93.003% id), ECA3415 (100.000% id), ECA4283 (66.765% id), ECA4292 (66.765% id); Belongs to the 'phage' integrase family.
  
   
 0.668
ECA3415
Probable integrase/recombinase; Similar to Photorhabdus luminescens Int SWALL:AAN64203 (EMBL:AY144117) (465 aa) fasta scores: E(): 7.7e-79, 63.66% id in 322 aa, and to Ralstonia solanacearum probable integrase/recombinase protein rsp0090 or rs05531 SWALL:Q8XTL6 (EMBL:AL646076) (347 aa) fasta scores: E(): 3e-52, 48.28% id in 321 aa. Also similar to ECA3389 (91.150% id), ECA3399 (93.003% id), ECA3406 (100.000% id), ECA4283 (66.765% id), ECA4292 (66.765% id).
  
   
 0.668
ECA3389
Similar to Ralstonia solanacearum probable integrase/recombinase protein rsp0090 or rs05531 SWALL:Q8XTL6 (EMBL:AL646076) (347 aa) fasta scores: E(): 3e-54, 48.59% id in 321 aa, and to Bacillus halodurans integrase/recombinase codv or bh2465 SWALL:Q9KA25 (EMBL:AP001515) (303 aa) fasta scores: E(): 1.1e-28, 35.85% id in 304 aa. Also similar to ECA3399 (93.824% id), ECA3406 (91.150% id), ECA3415 (91.150% id), ECA4283 (68.421% id), ECA4292 (68.421% id); Belongs to the 'phage' integrase family.
  
   
 0.666
ECA3399
Probable integrase/recombinase; Similar to Photorhabdus luminescens Int SWALL:AAN64203 (EMBL:AY144117) (465 aa) fasta scores: E(): 1.9e-79, 63.22% id in 329 aa, and to Ralstonia solanacearum probable integrase/recombinase protein rsp0090 or rs05531 SWALL:Q8XTL6 (EMBL:AL646076) (347 aa) fasta scores: E(): 4.1e-52, 48.28% id in 321 aa. Also similar to ECA3389 (93.824% id), ECA3406 (93.003% id), ECA3415 (93.003% id), ECA4283 (66.477% id), ECA4292 (66.477% id); Belongs to the 'phage' integrase family.
  
   
 0.663
ECA2624
Similar to Bacteriophage P2 presumed portal vertex protein Q SWALL:VPQ_BPP2 (SWALL:P25480) (344 aa) fasta scores: E(): 3.8e-60, 44.89% id in 343 aa and Bacteriophage 186 capsid portal protein W SWALL:Q37851 (EMBL:U32222) (340 aa) fasta scores: E(): 1e-61, 46.11% id in 347 aa.
  
    0.662
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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