STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2660Similar to Yersinia pestis hypothetical protein Ypo1362 ypo1362 SWALL:Q8ZGD9 (EMBL:AJ414148) (555 aa) fasta scores: E(): 1.1e-152, 66.3% id in 555 aa, and to Escherichia coli hypothetical protein ybjd or b0876 SWALL:YBJD_ECOLI (SWALL:P75828) (552 aa) fasta scores: E(): 1.3e-148, 67.14% id in 554 aa. (554 aa)    
Predicted Functional Partners:
hsdS
Subunit S of type I restriction-modification system; Similar to Escherichia coli type i restriction enzyme EcoEI specificity protein HsdS or Hss SWALL:T1SE_ECOLI (SWALL:P19705) (594 aa) fasta scores: E(): 4.7e-62, 44.05% id in 606 aa, and to Salmonella enterica styski methylase HsdS SWALL:P95733 (EMBL:Y11005) (587 aa) fasta scores: E(): 6.2e-57, 40.95% id in 608 aa.
  
  
 0.715
ECA0584
Similar to Bacillus coagulans restriction enzyme bgci alpha subunit bcgiA SWALL:T4BA_BACCO (SWALL:Q07605) (637 aa) fasta scores: E(): 1.3e-46, 31.12% id in 633 aa, and to Staphylococcus aureus bacteriophage phi-42 hypothetical 72.6 kDa protein SWALL:P95687 (EMBL:X94423) (639 aa) fasta scores: E(): 1.9e-42, 30.78% id in 653 aa.
  
  
 0.618
hsdM
Subunit M of type I restriction-modification system; Similar to Escherichia coli type I restriction enzyme EcoEI M protein HsdM SWALL:T1ME_ECOLI (SWALL:Q47282) (490 aa) fasta scores: E(): 6.2e-193, 97.55% id in 490 aa, and to Salmonella enterica styski methylase HsdM SWALL:P95732 (EMBL:Y11005) (493 aa) fasta scores: E(): 2e-178, 89.38% id in 490 aa.
  
  
 0.618
ECA1872
Putative porin; Similar to Aeromonas salmonicida maltoporin precursor LamB SWALL:LAMB_AERSA (SWALL:Q44287) (445 aa) fasta scores: E(): 1.8e-16, 32.18% id in 463 aa, and to Escherichia coli putative outer membrane protein yiec precursor yiec or b3720 SWALL:YIEC_ECOLI (SWALL:P26218) (538 aa) fasta scores: E(): 1.5e-109, 53.09% id in 550 aa.
  
     0.587
ECA3465
Similar to Yersinia pestis hypothetical protein y0964 SWALL:AAM84545 (EMBL:AE013700) (421 aa) fasta scores: E(): 1.4e-127, 71.56% id in 415 aa, and to Salmonella typhimurium hypothetical protein yafa or stm0318 SWALL:YAFA_SALTY (SWALL:P37722) (414 aa) fasta scores: E(): 8.4e-120, 66.18% id in 417 aa; Belongs to the UPF0255 family.
  
     0.534
ECA2185
Putative membrane protein; Similar to Shigella flexneri orf, conserved hypothetical protein sf1208 SWALL:AAN42821 (EMBL:AE015147) (92 aa) fasta scores: E(): 5e-21, 57.14% id in 91 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ychh or b1205 or c1663 or z1976 or ecs1710 SWALL:YCHH_ECOLI (SWALL:P31807) (92 aa) fasta scores: E(): 5.8e-21, 57.14% id in 91 aa.
  
     0.508
ECA3256
Similar to Yersinia pestis putative lipoprotein ypo2915 SWALL:Q8ZCQ6 (EMBL:AJ414154) (331 aa) fasta scores: E(): 7.9e-37, 45.45% id in 253 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yfhg or b2555 or z3831 or ecs3421 or sf2602 SWALL:YFHG_ECOLI (SWALL:P37328) (237 aa) fasta scores: E(): 3.6e-30, 45.61% id in 228 aa.
  
     0.472
ECA2661
Similar to Yersinia pestis putative membrane protein ypo1361 or y2818 SWALL:Q8ZGE0 (EMBL:AJ414147) (298 aa) fasta scores: E(): 4.1e-83, 74.16% id in 298 aa, and to Salmonella typhimurium putative inner membrane protein ybje or stm0938 SWALL:Q8ZQE7 (EMBL:AE008740) (299 aa) fasta scores: E(): 4.3e-75, 67.33% id in 300 aa.
     
 0.466
ECA2860
Conserved hypothetical protein; Similar to Shigella flexneri 2a hypothetical 32.4 kDa protein SWALL:Q93F04 (EMBL:AF326777) (290 aa) fasta scores: E(): 3.4e-37, 43.43% id in 297 aa, and to Escherichia coli hypothetical 32.5 kDa protein SWALL:Q8RLA4 (EMBL:AY082443) (290 aa) fasta scores: E(): 2.6e-37, 43.43% id in 297 aa.
 
     0.460
ECA0585
Similar to Bacillus coagulans restriction enzyme bgci beta subunit BcgiB SWALL:T4BB_BACCO (SWALL:Q07606) (341 aa) fasta scores: E(): 3.2e-05, 24.05% id in 345 aa, and to Pseudomonas syringae conserved domain protein pspto0285 SWALL:Q88AU8 (EMBL:AE016856) (360 aa) fasta scores: E(): 0.035, 23.75% id in 320 aa.
  
  
 0.444
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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