STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2665Similar to Escherichia coli probable N-acetylmuramoyl-L-alanine amidase ybjr or b0867 SWALL:YBJR_ECOLI (SWALL:P75820) (276 aa) fasta scores: E(): 2.3e-62, 57.93% id in 271 aa, and to Salmonella typhi putative N-acetylmuramoyl-L-alanine amidase sty0927 SWALL:Q8Z834 (EMBL:AL627268) (276 aa) fasta scores: E(): 3.6e-60, 56.77% id in 273 aa. (275 aa)    
Predicted Functional Partners:
ECA2666
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein ybjq or stm0930 or sty0926 SWALL:YBJQ_SALTY (SWALL:Q8XGV2) (107 aa) fasta scores: E(): 7.4e-32, 84.11% id in 107 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ybjq or b0866 or c0999 or z1099 or ecs0952 SWALL:YBJQ_ECOLI (SWALL:P75819) (107 aa) fasta scores: E(): 8.3e-31, 82.24% id in 107 aa; Belongs to the UPF0145 family.
  
    0.687
thiE
Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
 
      0.510
artP
Arginine transport ATP-binding protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri arginine transport ATP-binding protein ArtP or b0864 or c0997 or z1094 or ecs0947 or sf0818 SWALL:ARTP_ECOLI (SWALL:P30858) (242 aa) fasta scores: E(): 8.2e-75, 84.71% id in 242 aa.
       0.401
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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