STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
artISimilar to Escherichia coli arginine-binding periplasmic protein 1 precursor ArtI or b0863 SWALL:ARTI_ECOLI (SWALL:P30859) (243 aa) fasta scores: E(): 4e-67, 72.42% id in 243 aa; Belongs to the bacterial solute-binding protein 3 family. (243 aa)    
Predicted Functional Partners:
artP
Arginine transport ATP-binding protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri arginine transport ATP-binding protein ArtP or b0864 or c0997 or z1094 or ecs0947 or sf0818 SWALL:ARTP_ECOLI (SWALL:P30858) (242 aa) fasta scores: E(): 8.2e-75, 84.71% id in 242 aa.
 
 
 0.999
artM
Arginine transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri arginine transport system permease protein ArtM or b0861 or c0994 or z1091 or ecs0944 or sf0815 SWALL:ARTM_ECOLI (SWALL:P30862) (222 aa) fasta scores: E(): 1.2e-70, 78.37% id in 222 aa.
 
 0.997
artJ
Similar to Escherichia coli arginine-binding periplasmic protein 2 precursor ArtJ or b0860 SWALL:ARTJ_ECOLI (SWALL:P30860) (243 aa) fasta scores: E(): 1.1e-71, 78.6% id in 243 aa; Belongs to the bacterial solute-binding protein 3 family.
 
  
 
0.996
artQ
Arginine transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri arginine transport system permease protein ArtQ or b0862 or c0995 or sf0816 SWALL:ARTQ_ECOLI (SWALL:P30861) (238 aa) fasta scores: E(): 1.2e-79, 84.87% id in 238 aa.
 0.995
ECA0246
Similar to Rhizobium meliloti putative amino-acid transport system permease ABC transporter protein r03276 SWALL:Q92L15 (EMBL:AL591793) (226 aa) fasta scores: E(): 4.3e-53, 68.8% id in 218 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical amino-acid ABC transporter permease protein YecS SWALL:AAN43512 (EMBL:AE000284) (222 aa) fasta scores: E(): 1.8e-34, 50% id in 218 aa.
  0.975
glnP
Glutamine transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri glutamine transport system permease protein GlnP or b0810 or c0895 or z1032 or ecs0888 or sf0761 SWALL:GLNP_ECOLI (SWALL:P10345) (219 aa) fasta scores: E(): 1.9e-69, 84.01% id in 219 aa.
  0.968
ECA4194
Similar to Vibrio harveyi probable amino-acid ABC transporter permease protein PatM SWALL:PATM_VIBHA (SWALL:P52625) (223 aa) fasta scores: E(): 2.3e-36, 47.98% id in 223 aa, and to Bacillus subtilis probable amino-acid ABC transporter permease protein yxen or lp9F SWALL:YXEN_BACSU (SWALL:P54953) (224 aa) fasta scores: E(): 1.2e-45, 57.07% id in 219 aa.
  0.966
ECA2969
Similar to Bradyrhizobium japonicum ABC transporter permease protein blr8118 SWALL:BAC53383 (EMBL:AP005964) (220 aa) fasta scores: E(): 9.4e-32, 44.29% id in 219 aa, and to Bacillus halodurans ABC transporter bh1462 SWALL:Q9KCV7 (EMBL:AP001512) (218 aa) fasta scores: E(): 1.4e-28, 40.74% id in 216 aa.
  0.956
occM
Similar to Agrobacterium tumefaciens octopine transport system permease protein OccM SWALL:OCM2_AGRTU (SWALL:P35115) (245 aa) fasta scores: E(): 1e-50, 60.44% id in 225 aa, and to Rhizobium meliloti octopine transport system permease protein OccM occM SWALL:OCCM_RHIME (SWALL:P72296) (245 aa) fasta scores: E(): 1.2e-50, 60.81% id in 222 aa.
 
  0.948
occQ
Octopine transport system permease protein; Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine transport system permease protein OccQ SWALL:OCCQ_AGRTU (SWALL:P35119) (237 aa) fasta scores: E(): 3e-44, 51.94% id in 231 aa, and to Rhizobium meliloti octopine transport system permease protein OccQ SWALL:OCCQ_RHIME (SWALL:P72295) (237 aa) fasta scores: E(): 9.3e-43, 50.64% id in 233 aa.
 0.909
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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