rlmC protein (Pectobacterium atrosepticum) - STRING interaction network

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rlmC

Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily. (375 aa)

Predicted Functional Partners:

ECA2673

0.606

tmcA

0.567

trmB

0.458

rlmL

0.427

sun

0.421

rpsA

0.417

cah

0.413

Your Current Organism:

Pectobacterium atrosepticum

NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ECA2673	rlmC	ECA2673	ECA2672	Similar to Yersinia pestis putative membrane protein ypo1335 or y2846 SWALL:AAM86397 (EMBL:AJ414147) (154 aa) fasta scores: E(): 1e-23, 46.47% id in 142 aa, and to Salmonella typhimurium putative inner membrane protein ybjo or stm0881 SWALL:Q8ZQJ6 (EMBL:AE008737) (157 aa) fasta scores: E(): 1.5e-20, 42.56% id in 148 aa.	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	0.606
cah	rlmC	ECA0257	ECA2672	Carbonic anhydrase; Reversible hydration of carbon dioxide; Belongs to the alpha-carbonic anhydrase family.	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	0.413
cah	rpsA	ECA0257	ECA2591	Carbonic anhydrase; Reversible hydration of carbon dioxide; Belongs to the alpha-carbonic anhydrase family.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.501
cah	tmcA	ECA0257	ECA1266	Carbonic anhydrase; Reversible hydration of carbon dioxide; Belongs to the alpha-carbonic anhydrase family.	Putative acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).	0.542
cah	trmB	ECA0257	ECA0977	Carbonic anhydrase; Reversible hydration of carbon dioxide; Belongs to the alpha-carbonic anhydrase family.	Putative methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.412
rlmC	ECA2673	ECA2672	ECA2673	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	Similar to Yersinia pestis putative membrane protein ypo1335 or y2846 SWALL:AAM86397 (EMBL:AJ414147) (154 aa) fasta scores: E(): 1e-23, 46.47% id in 142 aa, and to Salmonella typhimurium putative inner membrane protein ybjo or stm0881 SWALL:Q8ZQJ6 (EMBL:AE008737) (157 aa) fasta scores: E(): 1.5e-20, 42.56% id in 148 aa.	0.606
rlmC	cah	ECA2672	ECA0257	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	Carbonic anhydrase; Reversible hydration of carbon dioxide; Belongs to the alpha-carbonic anhydrase family.	0.413
rlmC	rlmL	ECA2672	ECA2535	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	Putative RNA methylase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.	0.427
rlmC	rpsA	ECA2672	ECA2591	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.417
rlmC	sun	ECA2672	ECA4001	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.421
rlmC	tmcA	ECA2672	ECA1266	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	Putative acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).	0.567
rlmC	trmB	ECA2672	ECA0977	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	Putative methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.458
rlmL	rlmC	ECA2535	ECA2672	Putative RNA methylase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	0.427
rlmL	sun	ECA2535	ECA4001	Putative RNA methylase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.	Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.546
rpsA	cah	ECA2591	ECA0257	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	Carbonic anhydrase; Reversible hydration of carbon dioxide; Belongs to the alpha-carbonic anhydrase family.	0.501
rpsA	rlmC	ECA2591	ECA2672	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	0.417
rpsA	sun	ECA2591	ECA4001	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.764
rpsA	tmcA	ECA2591	ECA1266	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	Putative acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).	0.947
sun	rlmC	ECA4001	ECA2672	Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	0.421
sun	rlmL	ECA4001	ECA2535	Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Putative RNA methylase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.	0.546

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