ECA2673 protein (Pectobacterium atrosepticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ECA2673

Similar to Yersinia pestis putative membrane protein ypo1335 or y2846 SWALL:AAM86397 (EMBL:AJ414147) (154 aa) fasta scores: E(): 1e-23, 46.47% id in 142 aa, and to Salmonella typhimurium putative inner membrane protein ybjo or stm0881 SWALL:Q8ZQJ6 (EMBL:AE008737) (157 aa) fasta scores: E(): 1.5e-20, 42.56% id in 148 aa. (150 aa)

Predicted Functional Partners:

rlmC

0.571

potI

0.527

potH

0.460

potG

0.446

Your Current Organism:

Pectobacterium atrosepticum

NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ECA2673	potG	ECA2673	ECA2676	Similar to Yersinia pestis putative membrane protein ypo1335 or y2846 SWALL:AAM86397 (EMBL:AJ414147) (154 aa) fasta scores: E(): 1e-23, 46.47% id in 142 aa, and to Salmonella typhimurium putative inner membrane protein ybjo or stm0881 SWALL:Q8ZQJ6 (EMBL:AE008737) (157 aa) fasta scores: E(): 1.5e-20, 42.56% id in 148 aa.	Putrescine transport ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.446
ECA2673	potH	ECA2673	ECA2675	Similar to Yersinia pestis putative membrane protein ypo1335 or y2846 SWALL:AAM86397 (EMBL:AJ414147) (154 aa) fasta scores: E(): 1e-23, 46.47% id in 142 aa, and to Salmonella typhimurium putative inner membrane protein ybjo or stm0881 SWALL:Q8ZQJ6 (EMBL:AE008737) (157 aa) fasta scores: E(): 1.5e-20, 42.56% id in 148 aa.	Similar to Escherichia coli putrescine transport system permease protein PotH or b0856 SWALL:POTH_ECOLI (SWALL:P31135) (317 aa) fasta scores: E(): 5.4e-105, 82.13% id in 319 aa.	0.460
ECA2673	potI	ECA2673	ECA2674	Similar to Yersinia pestis putative membrane protein ypo1335 or y2846 SWALL:AAM86397 (EMBL:AJ414147) (154 aa) fasta scores: E(): 1e-23, 46.47% id in 142 aa, and to Salmonella typhimurium putative inner membrane protein ybjo or stm0881 SWALL:Q8ZQJ6 (EMBL:AE008737) (157 aa) fasta scores: E(): 1.5e-20, 42.56% id in 148 aa.	Similar to Escherichia coli, and Escherichia coli O6 putrescine transport system permease protein PotI or b0857 or c0990 SWALL:POTI_ECOLI (SWALL:P31136) (281 aa) fasta scores: E(): 2.8e-90, 86.12% id in 281 aa.	0.527
ECA2673	rlmC	ECA2673	ECA2672	Similar to Yersinia pestis putative membrane protein ypo1335 or y2846 SWALL:AAM86397 (EMBL:AJ414147) (154 aa) fasta scores: E(): 1e-23, 46.47% id in 142 aa, and to Salmonella typhimurium putative inner membrane protein ybjo or stm0881 SWALL:Q8ZQJ6 (EMBL:AE008737) (157 aa) fasta scores: E(): 1.5e-20, 42.56% id in 148 aa.	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	0.571
potG	ECA2673	ECA2676	ECA2673	Putrescine transport ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Similar to Yersinia pestis putative membrane protein ypo1335 or y2846 SWALL:AAM86397 (EMBL:AJ414147) (154 aa) fasta scores: E(): 1e-23, 46.47% id in 142 aa, and to Salmonella typhimurium putative inner membrane protein ybjo or stm0881 SWALL:Q8ZQJ6 (EMBL:AE008737) (157 aa) fasta scores: E(): 1.5e-20, 42.56% id in 148 aa.	0.446
potG	potH	ECA2676	ECA2675	Putrescine transport ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Similar to Escherichia coli putrescine transport system permease protein PotH or b0856 SWALL:POTH_ECOLI (SWALL:P31135) (317 aa) fasta scores: E(): 5.4e-105, 82.13% id in 319 aa.	0.993
potG	potI	ECA2676	ECA2674	Putrescine transport ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Similar to Escherichia coli, and Escherichia coli O6 putrescine transport system permease protein PotI or b0857 or c0990 SWALL:POTI_ECOLI (SWALL:P31136) (281 aa) fasta scores: E(): 2.8e-90, 86.12% id in 281 aa.	0.992
potH	ECA2673	ECA2675	ECA2673	Similar to Escherichia coli putrescine transport system permease protein PotH or b0856 SWALL:POTH_ECOLI (SWALL:P31135) (317 aa) fasta scores: E(): 5.4e-105, 82.13% id in 319 aa.	Similar to Yersinia pestis putative membrane protein ypo1335 or y2846 SWALL:AAM86397 (EMBL:AJ414147) (154 aa) fasta scores: E(): 1e-23, 46.47% id in 142 aa, and to Salmonella typhimurium putative inner membrane protein ybjo or stm0881 SWALL:Q8ZQJ6 (EMBL:AE008737) (157 aa) fasta scores: E(): 1.5e-20, 42.56% id in 148 aa.	0.460
potH	potG	ECA2675	ECA2676	Similar to Escherichia coli putrescine transport system permease protein PotH or b0856 SWALL:POTH_ECOLI (SWALL:P31135) (317 aa) fasta scores: E(): 5.4e-105, 82.13% id in 319 aa.	Putrescine transport ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.993
potH	potI	ECA2675	ECA2674	Similar to Escherichia coli putrescine transport system permease protein PotH or b0856 SWALL:POTH_ECOLI (SWALL:P31135) (317 aa) fasta scores: E(): 5.4e-105, 82.13% id in 319 aa.	Similar to Escherichia coli, and Escherichia coli O6 putrescine transport system permease protein PotI or b0857 or c0990 SWALL:POTI_ECOLI (SWALL:P31136) (281 aa) fasta scores: E(): 2.8e-90, 86.12% id in 281 aa.	0.993
potI	ECA2673	ECA2674	ECA2673	Similar to Escherichia coli, and Escherichia coli O6 putrescine transport system permease protein PotI or b0857 or c0990 SWALL:POTI_ECOLI (SWALL:P31136) (281 aa) fasta scores: E(): 2.8e-90, 86.12% id in 281 aa.	Similar to Yersinia pestis putative membrane protein ypo1335 or y2846 SWALL:AAM86397 (EMBL:AJ414147) (154 aa) fasta scores: E(): 1e-23, 46.47% id in 142 aa, and to Salmonella typhimurium putative inner membrane protein ybjo or stm0881 SWALL:Q8ZQJ6 (EMBL:AE008737) (157 aa) fasta scores: E(): 1.5e-20, 42.56% id in 148 aa.	0.527
potI	potG	ECA2674	ECA2676	Similar to Escherichia coli, and Escherichia coli O6 putrescine transport system permease protein PotI or b0857 or c0990 SWALL:POTI_ECOLI (SWALL:P31136) (281 aa) fasta scores: E(): 2.8e-90, 86.12% id in 281 aa.	Putrescine transport ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.992
potI	potH	ECA2674	ECA2675	Similar to Escherichia coli, and Escherichia coli O6 putrescine transport system permease protein PotI or b0857 or c0990 SWALL:POTI_ECOLI (SWALL:P31136) (281 aa) fasta scores: E(): 2.8e-90, 86.12% id in 281 aa.	Similar to Escherichia coli putrescine transport system permease protein PotH or b0856 SWALL:POTH_ECOLI (SWALL:P31135) (317 aa) fasta scores: E(): 5.4e-105, 82.13% id in 319 aa.	0.993
rlmC	ECA2673	ECA2672	ECA2673	Putative RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.	Similar to Yersinia pestis putative membrane protein ypo1335 or y2846 SWALL:AAM86397 (EMBL:AJ414147) (154 aa) fasta scores: E(): 1e-23, 46.47% id in 142 aa, and to Salmonella typhimurium putative inner membrane protein ybjo or stm0881 SWALL:Q8ZQJ6 (EMBL:AE008737) (157 aa) fasta scores: E(): 1.5e-20, 42.56% id in 148 aa.	0.571

Server load: low (36%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About