STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimKSimilar to Escherichia coli, and Escherichia coli O157:H7 ribosomal protein S6 modification protein rimk or b0852 or z1079 or ecs0932 SWALL:RIMK_ECOLI (SWALL:P17116) (300 aa) fasta scores: E(): 3.9e-85, 80.9% id in 288 aa. (303 aa)    
Predicted Functional Partners:
ECA2678
Similar to Yersinia pestis hypothetical protein ypo1330 or y2853 SWALL:Q8ZGG7 (EMBL:AJ414147) (161 aa) fasta scores: E(): 1.3e-47, 77.7% id in 157 aa, and to Salmonella typhimurium putative cytoplasmic protein ybjn or stm0876 SWALL:Q8ZQK1 (EMBL:AE008736) (158 aa) fasta scores: E(): 4.7e-41, 67.92% id in 159 aa.
 
  
 0.904
nfsA
Similar to Escherichia coli oxygen-insensitive NADPH nitroreductase NfsA or MdaA or Mda18 or b0851 SWALL:NFSA_ECOLI (SWALL:P17117) (240 aa) fasta scores: E(): 7.3e-62, 65.83% id in 240 aa; Belongs to the flavin oxidoreductase frp family.
  
  
 0.846
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
    
 0.844
ddlB
D-alanine--D-alanine ligase B; Cell wall formation.
    
 0.565
zntB
Zinc transport protein; Mediates efflux of zinc ions; Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
 
     0.534
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
     
 0.528
ECA3910
Putative mechanosensitive ion channel; Similar to Yersinia pestis putative membrane protein ypo0919 or y3306 SWALL:Q8ZHH5 (EMBL:AJ414145) (289 aa) fasta scores: E(): 4.8e-77, 74.04% id in 289 aa, and to Escherichia coli O6 hypothetical protein yggb yggb or c3502 SWALL:AAN81950 (EMBL:AE016766) (286 aa) fasta scores: E(): 5.8e-69, 69.03% id in 281 aa.
 
     0.493
hfq
Putative phage-related protein (host factor-I protein); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
     
 0.454
ECA0351
Probable nitroreductase; Similar to Bacillus subtilis nitro/flavin reductase NfrA or NfrA1 or Ipa-43D SWALL:NFRA_BACSU (SWALL:P39605) (249 aa) fasta scores: E(): 5.2e-19, 29.83% id in 248 aa, and to Clostridium acetobutylicum ortholog ycnd b.subtilis, nitroreductase cac0718 SWALL:Q97L47 (EMBL:AE007587) (246 aa) fasta scores: E(): 1.2e-42, 45.49% id in 244 aa; Belongs to the flavin oxidoreductase frp family.
  
  
 0.441
argA
Amino-acid acetyltransferase; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 amino-acid acetyltransferase ArgA or b2818 or c3412 or z4135 or ecs3675 SWALL:ARGA_ECOLI (SWALL:P08205) (443 aa) fasta scores: E(): 1.7e-149, 85.26% id in 441 aa, and to Yersinia pestis amino-acid acetyltransferase ArgA or ypo1022 or y3162 SWALL:Q8ZH86 (EMBL:AJ414146) (441 aa) fasta scores: E(): 1.5e-152, 88.43% id in 441 aa; Belongs to the acetyltransferase family. ArgA subfamily.
    
 0.418
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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