STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimKSimilar to Escherichia coli, and Escherichia coli O157:H7 ribosomal protein S6 modification protein rimk or b0852 or z1079 or ecs0932 SWALL:RIMK_ECOLI (SWALL:P17116) (300 aa) fasta scores: E(): 3.9e-85, 80.9% id in 288 aa. (303 aa)    
Predicted Functional Partners:
ECA2678
Similar to Yersinia pestis hypothetical protein ypo1330 or y2853 SWALL:Q8ZGG7 (EMBL:AJ414147) (161 aa) fasta scores: E(): 1.3e-47, 77.7% id in 157 aa, and to Salmonella typhimurium putative cytoplasmic protein ybjn or stm0876 SWALL:Q8ZQK1 (EMBL:AE008736) (158 aa) fasta scores: E(): 4.7e-41, 67.92% id in 159 aa.
 
  
 0.884
nfsA
Similar to Escherichia coli oxygen-insensitive NADPH nitroreductase NfsA or MdaA or Mda18 or b0851 SWALL:NFSA_ECOLI (SWALL:P17117) (240 aa) fasta scores: E(): 7.3e-62, 65.83% id in 240 aa; Belongs to the flavin oxidoreductase frp family.
  
  
 0.815
zntB
Zinc transport protein; Mediates efflux of zinc ions; Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
 
     0.501
ECA3910
Putative mechanosensitive ion channel; Similar to Yersinia pestis putative membrane protein ypo0919 or y3306 SWALL:Q8ZHH5 (EMBL:AJ414145) (289 aa) fasta scores: E(): 4.8e-77, 74.04% id in 289 aa, and to Escherichia coli O6 hypothetical protein yggb yggb or c3502 SWALL:AAN81950 (EMBL:AE016766) (286 aa) fasta scores: E(): 5.8e-69, 69.03% id in 281 aa.
 
     0.495
gshB
Similar to Escherichia coli glutathione synthetase GshB or Gsh-II or b2947 SWALL:GSHB_ECOLI (SWALL:P04425) (316 aa) fasta scores: E(): 2.1e-100, 81.2% id in 314 aa; Belongs to the prokaryotic GSH synthase family.
 
   
 0.461
kefB
Glutathione-regulated potassium-efflux system protein; Pore-forming subunit of a potassium efflux system that confers protection against electrophiles. Catalyzes K(+)/H(+) antiport.
  
  
 0.428
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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