STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2683Putative membrane protein; Similar to Yersinia pestis hypothetical membrane protein ypo1326 or y2857 SWALL:YD26_YERPE (SWALL:Q8ZGH1) (562 aa) fasta scores: E(): 6e-189, 89.14% id in 562 aa, and to Salmonella typhimurium hypothetical membrane protein ybjl or stm0870 SWALL:YBJL_SALTY (SWALL:Q8ZQK4) (561 aa) fasta scores: E(): 9.2e-188, 88.92% id in 560 aa. (562 aa)    
Predicted Functional Partners:
ECA1289
Similar to Yersinia pestis putative membrane protein ypo3055 SWALL:Q8ZCD6 (EMBL:AJ414155) (64 aa) fasta scores: E(): 1.4e-19, 73.84% id in 65 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein stm2484 or sty2722 SWALL:Q8XF02 (EMBL:AE008812) (66 aa) fasta scores: E(): 5.5e-17, 66.12% id in 62 aa.
  
     0.499
rof
Modulator of rho-dependent transcription termination; Similar to Escherichia coli, and Shigella flexneri Rof protein or b0189 or sf0179 SWALL:ROF_ECOLI (SWALL:P52098) (84 aa) fasta scores: E(): 3.4e-22, 70.23% id in 84 aa, and to Salmonella typhimurium modulator of rho-dependent transcription termination Rof or stm0237 SWALL:Q8ZRN4 (EMBL:AE008706) (86 aa) fasta scores: E(): 2.9e-20, 66.27% id in 86 aa.
  
     0.461
ompA
Outer-membrane protein A; Similar to Erwinia carotovora putative outer-membrane protein a precursor OmpA SWALL:Q9RM69 (EMBL:AJ249340) (367 aa) fasta scores: E(): 2.6e-120, 90.32% id in 372 aa, and to Serratia marcescens outer membrane protein a precursor OmpA SWALL:OMPA_SERMA (SWALL:P04845) (359 aa) fasta scores: E(): 4.8e-71, 75.61% id in 369 aa; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
    0.457
ECA0881
Similar to Yersinia pestis putative lipoprotein ypo3026 SWALL:Q8ZCG5 (EMBL:AJ414155) (203 aa) fasta scores: E(): 3.1e-41, 57.92% id in 202 aa, and to Salmonella typhi putative lipoprotein sty2684 SWALL:Q8Z4V2 (EMBL:AL627274) (191 aa) fasta scores: E(): 3.8e-38, 56.31% id in 190 aa.
  
     0.443
ECA1755
Putative membrane protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein yccf or stm1074 or sty1096 SWALL:Q8XGG4 (EMBL:AE008746) (148 aa) fasta scores: E(): 8.5e-52, 82.99% id in 147 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yccf or b0961 or sf0963 SWALL:YCCF_ECOLI (SWALL:P37065) (148 aa) fasta scores: E(): 1.4e-51, 83.67% id in 147 aa.
  
     0.419
ECA2319
Similar to Yersinia pestis hypothetical protein Ypo2187 SWALL:Q8ZEI3 (EMBL:AJ414151) (107 aa) fasta scores: E(): 2e-40, 91.58% id in 107 aa, and to Salmonella typhi hypothetical protein Sty1311 SWALL:Q8Z7E5 (EMBL:AL627269) (109 aa) fasta scores: E(): 1.6e-39, 90.65% id in 107 aa; Belongs to the UPF0263 family.
  
     0.407
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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