STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
deoRDeoxyribose operon repressor; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 deoxyribose operon repressor DeoR or NucR or b0840 or c0925 or z1067 or ecs0920 SWALL:DEOR_ECOLI (SWALL:P06217) (252 aa) fasta scores: E(): 6.5e-55, 54.72% id in 254 aa. (257 aa)    
Predicted Functional Partners:
fruK
1-phosphofructokinase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 1-phosphofructokinase FruK or Fpk or b2168 or c2703 or z3426 or ecs3060 or sf2253 SWALL:K1PF_ECOLI (SWALL:P23539) (312 aa) fasta scores: E(): 7.8e-108, 90.7% id in 312 aa; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.763
fruA
Similar to Escherichia coli pts system, fructose-specific IIbc component FruA or PtsF or b2167 SWALL:PTFB_ECOLI (SWALL:P20966) (563 aa) fasta scores: E(): 1.4e-146, 75.13% id in 567 aa.
 
  
 0.705
deoC-2
Putative deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
     
 0.697
gntR-2
Partial CDS. Similar to the C-terminal regions of Escherichia coli, and Escherichia coli O6 gluconate utilization system Gnt-I transcriptional repressor GntR or b3438 or c4227 SWALL:GNTR_ECOLI (SWALL:P46860) (331 aa) fasta scores: E(): 4.1e-47, 78.36% id in 171 aa, and to Yersinia pestis gluconate utilization system Gnt-I transcriptional repressor gntr or ypo3955 or y3873 SWALL:Q8ZA63 (EMBL:AJ414160) (331 aa) fasta scores: E(): 1.8e-47, 78.94% id in 171 aa.
  
   
 0.599
arsR
Similar to Escherichia coli arsenical resistance operon repressor ArsR or ArsE or b3501 SWALL:ARSR_ECOLI (SWALL:P37309) (117 aa) fasta scores: E(): 7.2e-25, 58.09% id in 105 aa.
      
 0.558
iclR
Similar to Escherichia coli acetate operon repressor IclR or b4018 SWALL:ICLR_ECOLI (SWALL:P16528) (274 aa) fasta scores: E(): 9.5e-81, 77.53% id in 276 aa.
      
 0.556
gntR
Similar to Escherichia coli, and Escherichia coli O6 gluconate utilization system Gnt-I transcriptional repressor GntR or b3438 or c4227 SWALL:GNTR_ECOLI (SWALL:P46860) (331 aa) fasta scores: E(): 7.1e-94, 74.62% id in 331 aa.
      
 0.543
ECA3519
Putative acyl-CoA synthetase; Similar to Yersinia pestis putative acetyltransferase ypo3272 SWALL:Q8ZBW2 (EMBL:AJ414156) (880 aa) fasta scores: E(): 0, 79.56% id in 881 aa, and to Escherichia coli hypothetical protein yfiq or b2584 SWALL:YFIQ_ECOLI (SWALL:P76594) (886 aa) fasta scores: E(): 0, 76.84% id in 881 aa.
    
   0.521
fis
DNA-binding protein; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family.
      
 0.503
lacI
Similar to Escherichia coli lactose operon repressor LacI or b0345 SWALL:LACI_ECOLI (SWALL:P03023) (360 aa) fasta scores: E(): 1.6e-68, 52.11% id in 355 aa.
      
 0.487
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.