STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2687ABC transporter integral membrane protein; Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 ABC transporter integral membrane protein sfbc or t2348 SWALL:AAO69940 (EMBL:AE016842) (219 aa) fasta scores: E(): 2.6e-61, 81.65% id in 218 aa, and to Salmonella enteritidis integral membrane protein sfbC SWALL:Q9S4Y9 (EMBL:AF102556) (202 aa) fasta scores: E(): 1.6e-57, 83.08% id in 201 aa. (219 aa)    
Predicted Functional Partners:
metN2
ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.998
ECA2689
Similar to Salmonella typhi lipoprotein sfba or sty0558 SWALL:Q8Z8R6 (EMBL:AL627267) (276 aa) fasta scores: E(): 2.7e-73, 74.36% id in 277 aa, and to Oceanobacillus iheyensis lipoprotein ob2098 SWALL:BAC14054 (EMBL:AP004600) (274 aa) fasta scores: E(): 9.9e-41, 46.93% id in 277 aa.
 0.993
metN1
ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.988
metN
D-methionine transport ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.988
nlpA
Similar to Escherichia coli lipoprotein-28 precursor NlpA or b3661 SWALL:NLPA_ECOLI (SWALL:P04846) (272 aa) fasta scores: E(): 4e-69, 73.18% id in 261 aa.
 0.987
metQ
Similar to Escherichia coli D-methionine-binding lipoprotein MetQ precursor MetQ or b0197 SWALL:METQ_ECOLI (SWALL:P28635) (271 aa) fasta scores: E(): 3.6e-88, 87.82% id in 271 aa; Belongs to the nlpA lipoprotein family.
 0.987
ECA2066
Putative lipoprotein; Similar to Salmonella typhimurium, and Salmonella enteritidis putative ABC-type transport system ATPase component/cell division protein sfba or stm0510 SWALL:Q9S4Z1 (EMBL:AE008719) (276 aa) fasta scores: E(): 4.6e-58, 63.32% id in 259 aa, and to Oceanobacillus iheyensis lipoprotein ob2098 SWALL:BAC14054 (EMBL:AP004600) (274 aa) fasta scores: E(): 1.2e-37, 44.65% id in 262 aa.
 0.985
metI
Similar to Escherichia coli D-methionine transport system permease protein MetI or b0198 SWALL:METI_ECOLI (SWALL:P31547) (217 aa) fasta scores: E(): 1.6e-67, 90.32% id in 217 aa.
  
  
 
0.907
ECA2064
ABC transporter permease protein; Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 ABC transporter integral membrane protein sfbC SWALL:AAO69940 (EMBL:AE016842) (219 aa) fasta scores: E(): 5.5e-61, 81.65% id in 218 aa, and to Oceanobacillus iheyensis ABC transporter permease ob2099 SWALL:Q8EPK2 (EMBL:AP004600) (221 aa) fasta scores: E(): 1.1e-40, 57.4% id in 216 aa.
  
  
 
0.900
metA
Homoserine O-succinyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine; Belongs to the MetA family.
  
  
 0.550
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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