STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ehpDSimilar to Pseudomonas aeruginosa phenazine/pyocyanine biosynthesis protein PhzF SWALL:PHZF_PSEAE (SWALL:O69754) (278 aa) fasta scores: E(): 2.2e-56, 54.96% id in 282 aa, and to Pantoea agglomerans EhpD SWALL:AAN40893 (EMBL:AF451953) (287 aa) fasta scores: E(): 8.8e-40, 46.12% id in 258 aa. (281 aa)    
Predicted Functional Partners:
ehpB
Putative phenazine antibiotic biosynthesis protein; Similar to Pseudomonas chlororaphis PhzD SWALL:Q9R9G4 (EMBL:AF195615) (207 aa) fasta scores: E(): 4.5e-38, 47.29% id in 203 aa, and to Pantoea agglomerans EhpB SWALL:AAN40891 (EMBL:AF451953) (209 aa) fasta scores: E(): 1.9e-36, 46.73% id in 199 aa.
  
 
 0.981
ehpA
Putative phenazine antibiotic biosynthesis protein; Similar to Pseudomonas aeruginosa PhzB or pa4211 SWALL:O69753 (EMBL:AF005404) (162 aa) fasta scores: E(): 2.4e-41, 64.43% id in 149 aa, and to Pantoea agglomerans EhpA SWALL:AAN40890 (EMBL:AF451953) (158 aa) fasta scores: E(): 8.9e-37, 58.5% id in 147 aa.
  
 
 0.959
ehpC
Putative phenazine antibiotic biosynthesis protein; Similar to Pseudomonas aeruginosa PhzE and pa4214 SWALL:O33410 (EMBL:AF005404) (627 aa) fasta scores: E(): 1.2e-105, 45.65% id in 622 aa, and to Pantoea agglomerans EhpC SWALL:AAN40892 (EMBL:AF451953) (634 aa) fasta scores: E(): 6.8e-55, 37.82% id in 624 aa.
 
  
 0.946
ehpE
Similar to Pseudomonas chlororaphis phenazine biosynthesis protein PhzD SWALL:PHZD_PSECL (SWALL:Q51521) (222 aa) fasta scores: E(): 1.1e-29, 38.02% id in 213 aa, and to Pantoea agglomerans EhpE SWALL:AAN40894 (EMBL:AF451953) (208 aa) fasta scores: E(): 1.8e-20, 34.95% id in 206 aa.
  
    0.815
ECA2700
Hypothetical protein; No significant database matches.
       0.778
ehpF
Putative phenazine antibiotic biosynthesis protein; Similar to Pantoea agglomerans EhpF SWALL:AAN40895 (EMBL:AF451953) (366 aa) fasta scores: E(): 3.2e-61, 43.02% id in 344 aa, and to Streptomyces griseus orf2 protein SWALL:Q9ZN75 (EMBL:AB022095) (352 aa) fasta scores: E(): 8e-46, 39.88% id in 351 aa.
       0.761
ehpG
Putative phenazine antibiotic biosynthesis protein; Similar to Pantoea agglomerans EhpG SWALL:AAN40896 (EMBL:AF451953) (311 aa) fasta scores: E(): 7.2e-36, 39.41% id in 274 aa, and to Streptomyces griseus Orf3 protein SWALL:Q9ZN74 (EMBL:AB022095) (456 aa) fasta scores: E(): 2.1e-22, 30.9% id in 453 aa.
  
    0.759
ECA2695
Similar to Escherichia coli, and Escherichia coli O6 malonyl CoA-acyl carrier protein transacylase FabD or TfpA or b1092 or c1361 SWALL:FABD_ECOLI (SWALL:P25715) (308 aa) fasta scores: E(): 0.069, 20.96% id in 291 aa, and to Chlorobium tepidum malonyl coa-acyl carrier protein transacylase fabd or ct2115 SWALL:Q8KAP1 (EMBL:AE012960) (305 aa) fasta scores: E(): 0.0019, 22.22% id in 288 aa.
       0.757
ECA2694
Putative polyketide synthetase; Similar to Amycolatopsis mediterranei peptide synthetase BpsD SWALL:Q939Y2 (EMBL:Y16952) (581 aa) fasta scores: E(): 2e-44, 32.34% id in 575 aa, and to Myxococcus xanthus Ta1 SWALL:Q9Z5F4 (EMBL:AJ006977) (2393 aa) fasta scores: E(): 4e-51, 32.97% id in 552 aa.
       0.694
pecS
Regulatory protein; Similar to Erwinia chrysanthemi regulatory protein PecS SWALL:PECS_ERWCH (SWALL:P42195) (166 aa) fasta scores: E(): 5.5e-25, 48.76% id in 162 aa.
 
   
 0.570
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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