STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ehpBPutative phenazine antibiotic biosynthesis protein; Similar to Pseudomonas chlororaphis PhzD SWALL:Q9R9G4 (EMBL:AF195615) (207 aa) fasta scores: E(): 4.5e-38, 47.29% id in 203 aa, and to Pantoea agglomerans EhpB SWALL:AAN40891 (EMBL:AF451953) (209 aa) fasta scores: E(): 1.9e-36, 46.73% id in 199 aa. (206 aa)    
Predicted Functional Partners:
ehpC
Putative phenazine antibiotic biosynthesis protein; Similar to Pseudomonas aeruginosa PhzE and pa4214 SWALL:O33410 (EMBL:AF005404) (627 aa) fasta scores: E(): 1.2e-105, 45.65% id in 622 aa, and to Pantoea agglomerans EhpC SWALL:AAN40892 (EMBL:AF451953) (634 aa) fasta scores: E(): 6.8e-55, 37.82% id in 624 aa.
 
 
 0.997
ehpD
Similar to Pseudomonas aeruginosa phenazine/pyocyanine biosynthesis protein PhzF SWALL:PHZF_PSEAE (SWALL:O69754) (278 aa) fasta scores: E(): 2.2e-56, 54.96% id in 282 aa, and to Pantoea agglomerans EhpD SWALL:AAN40893 (EMBL:AF451953) (287 aa) fasta scores: E(): 8.8e-40, 46.12% id in 258 aa.
  
 
 0.981
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
 
  
 0.973
entE
Similar to Escherichia coli enterobactin synthetase component E [includes: 2,3-dihydroxybenzoate-AMP ligase; S-dihydroxybenzoyltransferase] EntE SWALL:ENTE_ECOLI (SWALL:P10378) (536 aa) fasta scores: E(): 1.1e-129, 64.63% id in 540 aa; EC number 7.7.58.
 
 
 0.965
ECA1487
Non-ribosomal peptide synthetase; Similar to Pseudomonas syringae syringomycin synthetase SyrE SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 0, 43.13% id in 6600 aa, and to Anabaena sp. 90 peptide synthetase AdpB SWALL:Q9K5M1 (EMBL:AJ269505) (5060 aa) fasta scores: E(): 2.8e-208, 34.22% id in 4859 aa.
 
  
 0.951
ECA1488
Non-ribosomal peptide synthetase; Similar to Pseudomonas syringae syringomycin synthetase SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 0, 42.92% id in 7655 aa, and to Pseudomonas sp. MIS38 arthrofactin synthetase c arfC SWALL:BAC67536 (EMBL:AB107223) (5924 aa) fasta scores: E(): 0, 46.8% id in 5469 aa.
 
  
 0.951
entC
Enterobactin synthetase component C (isochorismate synthase); Similar to Escherichia coli, and Escherichia coli O157:H7 isochorismate synthase EntC or b0593 or z0735 or ecs0632 SWALL:ENTC_ECOLI (SWALL:P10377) (391 aa) fasta scores: E(): 6.1e-66, 46.31% id in 393 aa, and to Pseudomonas fluorescens isochorismate synthase PmsC SWALL:P95475 (EMBL:Y09356) (391 aa) fasta scores: E(): 8.2e-75, 51.2% id in 373 aa.
 
 
 0.950
ECA2694
Putative polyketide synthetase; Similar to Amycolatopsis mediterranei peptide synthetase BpsD SWALL:Q939Y2 (EMBL:Y16952) (581 aa) fasta scores: E(): 2e-44, 32.34% id in 575 aa, and to Myxococcus xanthus Ta1 SWALL:Q9Z5F4 (EMBL:AJ006977) (2393 aa) fasta scores: E(): 4e-51, 32.97% id in 552 aa.
 
  
 0.919
entA
Enterobactin synthetase component A (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase); Similar to Escherichia coli 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase EntA or b0596 SWALL:ENTA_ECOLI (SWALL:P15047) (248 aa) fasta scores: E(): 6.7e-54, 59.92% id in 252 aa.
 
 
 0.890
ehpE
Similar to Pseudomonas chlororaphis phenazine biosynthesis protein PhzD SWALL:PHZD_PSECL (SWALL:Q51521) (222 aa) fasta scores: E(): 1.1e-29, 38.02% id in 213 aa, and to Pantoea agglomerans EhpE SWALL:AAN40894 (EMBL:AF451953) (208 aa) fasta scores: E(): 1.8e-20, 34.95% id in 206 aa.
  
  
 0.841
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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