STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2704Putative phenazine antibiotic biosynthesis protein; Similar to Streptomyces aureofaciens oxygenase-like protein aur2G SWALL:Q93M01 (EMBL:AY033994) (285 aa) fasta scores: E(): 1.2e-38, 45.56% id in 259 aa, and to Rhizobium loti oxidoreductase of short-chain mlr1595 SWALL:Q98K81 (EMBL:AP002997) (279 aa) fasta scores: E(): 2.9e-44, 49.8% id in 255 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (259 aa)    
Predicted Functional Partners:
ECA4053
Putative short chain dehydrogenase; Similar to Agrobacterium tumefaciens dehydrogenase atu5210 or agr_pat_293 SWALL:Q8UKB3 (EMBL:AE008943) (259 aa) fasta scores: E(): 9.5e-62, 65.11% id in 258 aa, and to Rhizobium meliloti sma1629 protein ra0888 or sma1629 SWALL:Q92YJ2 (EMBL:AE007275) (259 aa) fasta scores: E(): 1.4e-64, 70.86% id in 254 aa.
  
 
   0.664
ehpA
Putative phenazine antibiotic biosynthesis protein; Similar to Pseudomonas aeruginosa PhzB or pa4211 SWALL:O69753 (EMBL:AF005404) (162 aa) fasta scores: E(): 2.4e-41, 64.43% id in 149 aa, and to Pantoea agglomerans EhpA SWALL:AAN40890 (EMBL:AF451953) (158 aa) fasta scores: E(): 8.9e-37, 58.5% id in 147 aa.
  
    0.637
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 
 
 0.599
ECA2694
Putative polyketide synthetase; Similar to Amycolatopsis mediterranei peptide synthetase BpsD SWALL:Q939Y2 (EMBL:Y16952) (581 aa) fasta scores: E(): 2e-44, 32.34% id in 575 aa, and to Myxococcus xanthus Ta1 SWALL:Q9Z5F4 (EMBL:AJ006977) (2393 aa) fasta scores: E(): 4e-51, 32.97% id in 552 aa.
  
 
 0.586
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
 
 
 0.580
ECA2695
Similar to Escherichia coli, and Escherichia coli O6 malonyl CoA-acyl carrier protein transacylase FabD or TfpA or b1092 or c1361 SWALL:FABD_ECOLI (SWALL:P25715) (308 aa) fasta scores: E(): 0.069, 20.96% id in 291 aa, and to Chlorobium tepidum malonyl coa-acyl carrier protein transacylase fabd or ct2115 SWALL:Q8KAP1 (EMBL:AE012960) (305 aa) fasta scores: E(): 0.0019, 22.22% id in 288 aa.
  
  
 0.487
ehpR
Putative phenazine antibiotic biosynthesis protein; Required for resistance to the phenazine antibiotic.
  
    0.476
ehpC
Putative phenazine antibiotic biosynthesis protein; Similar to Pseudomonas aeruginosa PhzE and pa4214 SWALL:O33410 (EMBL:AF005404) (627 aa) fasta scores: E(): 1.2e-105, 45.65% id in 622 aa, and to Pantoea agglomerans EhpC SWALL:AAN40892 (EMBL:AF451953) (634 aa) fasta scores: E(): 6.8e-55, 37.82% id in 624 aa.
  
    0.468
ehpB
Putative phenazine antibiotic biosynthesis protein; Similar to Pseudomonas chlororaphis PhzD SWALL:Q9R9G4 (EMBL:AF195615) (207 aa) fasta scores: E(): 4.5e-38, 47.29% id in 203 aa, and to Pantoea agglomerans EhpB SWALL:AAN40891 (EMBL:AF451953) (209 aa) fasta scores: E(): 1.9e-36, 46.73% id in 199 aa.
  
    0.468
ehpE
Similar to Pseudomonas chlororaphis phenazine biosynthesis protein PhzD SWALL:PHZD_PSECL (SWALL:Q51521) (222 aa) fasta scores: E(): 1.1e-29, 38.02% id in 213 aa, and to Pantoea agglomerans EhpE SWALL:AAN40894 (EMBL:AF451953) (208 aa) fasta scores: E(): 1.8e-20, 34.95% id in 206 aa.
  
    0.464
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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