STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adhCSimilar to Escherichia coli alcohol dehydrogenase class III AdhC or b0356 SWALL:ADH3_ECOLI (SWALL:P25437) (369 aa) fasta scores: E(): 1.7e-102, 70.46% id in 369 aa, and to Yersinia pestis alcohol dehydrogenase class III, formaldehyde dehydrogenase adhc or y2667 SWALL:AAM86220 (EMBL:AE013869) (379 aa) fasta scores: E(): 2.3e-130, 91.93% id in 372 aa; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (373 aa)    
Predicted Functional Partners:
ECA2715
Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.
 0.999
adhE
Aldehyde-alcohol dehydrogenase; Similar to Escherichia coli, and Escherichia coli O157:H7 aldehyde-alcohol dehydrogenase [includes: alcohol dehydrogenase, acetaldehyde dehydrogenase, and pyruvate-formate-lyase deactivase AdhE or Ana or b1241 or z2016 or ecs1741 SWALL:ADHE_ECOLI (SWALL:P17547) (890 aa) fasta scores: E(): 0, 89.1% id in 890 aa; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.988
aldB
Aldehyde dehydrogenase B; Similar to Escherichia coli aldehyde dehydrogenase B AldB or b3588 SWALL:ALDB_ECOLI (SWALL:P37685) (512 aa) fasta scores: E(): 1.4e-172, 83.2% id in 500 aa.
  
 0.973
ECA3198
Putative zinc-binding dehydrogenase; Similar to Escherichia coli hypothetical zinc-type alcohol dehydrogenase-like protein yjgb or b4269 SWALL:YJGB_ECOLI (SWALL:P27250) (339 aa) fasta scores: E(): 2.9e-112, 83.18% id in 339 aa, and to Salmonella typhimurium putative alcohol dehydrogenase yjgb or stm4486 SWALL:Q8ZK20 (EMBL:AE008910) (339 aa) fasta scores: E(): 6.8e-112, 83.48% id in 339 aa.
    
 0.931
tadA
Putative cytidine and deoxycytidylate deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
 
  0.728
ECA2716
Similar to Schizosaccharomyces pombe glutathione S-transferase III gst3 or spac688.04C SWALL:GTH3_SCHPO (SWALL:Q9P6M1) (242 aa) fasta scores: E(): 1.8e-23, 38.57% id in 210 aa, and to Xanthomonas axonopodis glutathione S-transferase GstA or xac2394 SWALL:Q8PJY3 (EMBL:AE011876) (232 aa) fasta scores: E(): 3.5e-41, 50.68% id in 219 aa; Belongs to the GST superfamily.
    
 0.698
rfbI
Similar to Yersinia pestis, and Yersinia pseudotuberculosis CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase AscD or RfbI or ypo3116 or y1067 SWALL:ASCD_YERPE (SWALL:P37911) (328 aa) fasta scores: E(): 2.8e-45, 45.7% id in 326 aa, and to Salmonella typhimurium RfbI protein or stm2093 SWALL:RFBI_SALTY (SWALL:P26395) (330 aa) fasta scores: E(): 1.1e-50, 46.01% id in 326 aa.
 
 
 0.694
ECA2690
Similar to Yersinia pestis putative glutathione S-transferase-family protein ypo1314 SWALL:Q8ZGI3 (EMBL:AJ414147) (206 aa) fasta scores: E(): 1.4e-53, 62.62% id in 206 aa, and to Salmonella typhimurium putative glutathione S-transferase ylij or stm0862 SWALL:Q8ZQL2 (EMBL:AE008736) (208 aa) fasta scores: E(): 1.6e-47, 56.73% id in 208 aa.
  
  
 0.659
fucO
Lactaldehyde reductase; Similar to Escherichia coli, and Escherichia coli O157:H7 lactaldehyde reductase FucO or b2799 or z4116 or ecs3659 SWALL:FUCO_ECOLI (SWALL:P11549) (383 aa) fasta scores: E(): 1.5e-104, 73.69% id in 384 aa.
    
 0.646
ECA3762
Similar to Escherichia coli O6 putative alcohol dehydrogenase c0762 SWALL:Q8FJW8 (EMBL:AE016757) (385 aa) fasta scores: E(): 1.1e-83, 61.96% id in 376 aa, and to Agrobacterium tumefaciens AttL SWALL:Q8VPD6 (EMBL:AY052389) (399 aa) fasta scores: E(): 4.6e-36, 35.84% id in 371 aa.
    
 0.646
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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