STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ECA2715Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde. (286 aa)    
Predicted Functional Partners:
adhC
Similar to Escherichia coli alcohol dehydrogenase class III AdhC or b0356 SWALL:ADH3_ECOLI (SWALL:P25437) (369 aa) fasta scores: E(): 1.7e-102, 70.46% id in 369 aa, and to Yersinia pestis alcohol dehydrogenase class III, formaldehyde dehydrogenase adhc or y2667 SWALL:AAM86220 (EMBL:AE013869) (379 aa) fasta scores: E(): 2.3e-130, 91.93% id in 372 aa; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
 0.999
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 0.978
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
 
 0.954
ECA1507
Similar to Escherichia coli formate dehydrogenase H FdhF or b4079 SWALL:FDHF_ECOLI (SWALL:P07658) (715 aa) fasta scores: E(): 1.3e-194, 66.52% id in 699 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.947
fdhF
Similar to Escherichia coli formate dehydrogenase H FdhF or b4079 SWALL:FDHF_ECOLI (SWALL:P07658) (715 aa) fasta scores: E(): 2.2e-193, 64.61% id in 715 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.569
fdnG
Similar to Escherichia coli formate dehydrogenase, nitrate-inducible, major subunit FdnG or b1474 SWALL:FDNG_ECOLI (SWALL:P24183) (1015 aa) fasta scores: E(): 0, 69.75% id in 1015 aa.
  
 
  0.542
cfa7
Similar to Pseudomonas syringae type I polyketide synthase Cfa7 SWALL:Q9Z3T8 (EMBL:AF098795) (2066 aa) fasta scores: E(): 0, 52.6% id in 2091 aa, and to Streptomyces coelicolor putative type I polyketide synthase sco6275 SWALL:CAD55506 (EMBL:AL939127) (4557 aa) fasta scores: E(): 3e-183, 44.33% id in 1845 aa.
    
 0.540
fdnI
Formate dehydrogenase, nitrate-inducible, cytochrome b556; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri formate dehydrogenase, nitrate-inducible, cytochrome b556 FdnI or b1476 or z2234 or ecs2080 or sf1749 SWALL:FDNI_ECOLI (SWALL:P24185) (217 aa) fasta scores: E(): 7.5e-70, 78.19% id in 211 aa.
     
  0.540
fdnH
Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
     
  0.540
ECA2716
Similar to Schizosaccharomyces pombe glutathione S-transferase III gst3 or spac688.04C SWALL:GTH3_SCHPO (SWALL:Q9P6M1) (242 aa) fasta scores: E(): 1.8e-23, 38.57% id in 210 aa, and to Xanthomonas axonopodis glutathione S-transferase GstA or xac2394 SWALL:Q8PJY3 (EMBL:AE011876) (232 aa) fasta scores: E(): 3.5e-41, 50.68% id in 219 aa; Belongs to the GST superfamily.
 
    0.538
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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